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Some non-Python packages fail to resolve dependencies. It seems a conda environment is not activated properly.
Following command raises a perl dependency error.
condax install -c conda-forge -c bioconda agat agat_convert_sp_gxf2gxf.pl --help
But running the executable within the conda environment works.
conda create -y -n agat -c conda-forge -c bioconda agat conda run -n agat agat_convert_sp_gxf2gxf.pl --help
Wrapping an executable with conda run would work better than a symlink.
conda run
The text was updated successfully, but these errors were encountered:
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Problem
Some non-Python packages fail to resolve dependencies. It seems a conda environment is not activated properly.
Example
Following command raises a perl dependency error.
But running the executable within the conda environment works.
Proposal
Wrapping an executable with
conda run
would work better than a symlink.The text was updated successfully, but these errors were encountered: