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torsion feature for specific range #1543

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Bazzinga18 opened this issue Feb 22, 2022 · 2 comments
Closed

torsion feature for specific range #1543

Bazzinga18 opened this issue Feb 22, 2022 · 2 comments

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@Bazzinga18
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I want to define a feature in which i want to take backbone and sidechain torsions but for a specific residue range.
lets say size of my protein is 120 aa, and i want to consider the above feature from residue number 111 to 120. How one can define the feature?? please help.
I use the following code for whole sequence but i didnt know how to do for specific sequence range
feat = pyemma.coordinates.featurizer(pdb) feat.add_backbone_torsions(cossin=True, periodic=False) feat.add_sidechain_torsions(which='chi1', cossin=True, periodic=False)

@thempel thempel closed this as completed Feb 22, 2022
@Bazzinga18
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thanks;)

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