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DESCRIPTION
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DESCRIPTION
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Package: GRridge
Type: Package
Title: Better prediction by use of co-data: Adaptive group-regularized ridge regression
Version: 1.7.5
Date: 2019-4-16
Author: Mark A. van de Wiel <mark.vdwiel@vumc.nl>, Putri W. Novianti <p.novianti@vumc.nl>
Maintainer: Mark A. van de Wiel <mark.vdwiel@vumc.nl>
Depends: R (>= 3.2), penalized, Iso, survival, methods, graph,stats,glmnet,mvtnorm
Suggests: testthat
Description: This package allows the use of multiple sources of co-data (e.g. external p-values, gene lists, annotation) to improve prediction of binary, continuous and survival response using (logistic, linear or Cox) group-regularized ridge regression. It also facilitates post-hoc variable selection and prediction diagnostics by cross-validation using ROC curves and AUC.
biocViews: Classification, Regression, Survival, Bayesian, RNASeq, GenePrediction, GeneExpression, Pathways, GeneSetEnrichment, GO, KEGG, GraphAndNetwork, ImmunoOncology
License: GPL-3
LazyLoad: yes