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DESCRIPTION
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DESCRIPTION
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Package: proteasy
Type: Package
Title: Protease Mapping
Version: 0.99.11
Authors@R: c(person("Martin", "Rydén", role=c("aut", "cre"),
email="martin.ryden@med.lu.se",
comment=c(ORCID="0000-0001-6968-4314")))
Description: Retrieval of experimentally derived protease- and cleavage data
derived from the MEROPS database. Proteasy contains functions for
mapping peptide termini to known sites where a protease cleaves. This
package also makes it possible to quickly look up known substrates
based on a list of (potential) proteases, or vice versa - look up
proteases based on a list of substrates.
biocViews: Proteomics, BiomedicalInformatics, FunctionalGenomics
URL: https://github.com/martinry/proteasy
BugReports: https://github.com/martinry/proteasy/issues
Depends:
R (>= 4.2.0)
Imports:
data.table,
stringr,
ensembldb,
AnnotationFilter,
EnsDb.Hsapiens.v86,
EnsDb.Mmusculus.v79,
EnsDb.Rnorvegicus.v79,
Rcpi,
methods,
utils
Suggests:
BiocStyle,
knitr,
rmarkdown,
igraph,
ComplexHeatmap,
viridis,
R.utils
License: GPL-3
LazyData: false
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.2.0
Collate:
'Classes.R'
'Generics.R'
'Methods.R'
'browseProtease.R'
'helper-functions.R'
'findProtease.R'
'proteasy-package.R'
'searchProtease.R'
'searchSubstrate.R'