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Welcome to the barapost wiki!

"Barapost" command line toolkit is designed for sorting FASTA, FASTQ and FAST5 files (i.e. separation into different files) according to taxonomic classification of nucleotide sequences stored in them. Classification is implemented as finding the most similar reference sequence in a nucleotide database: remotely using NCBI BLAST web serveice or on a local machine with BLAST+ toolkit.

• Pre-requirements
• Installation
• 1. prober
  • Options
  • Explanation of output files
  • Examples
• 2. barapost
  • Options
  • Using your own FASTA files as database
  • Explanation of output files
  • Examples
• 3. fastQA5-sorter
  • Options
  • Explanation of output files
  • Examples
  • FAST5 sorting
  • FAST5 untwisting
  • BCsummarizer
• Workflow examples