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pip install rii -- fails on osx with clang error #35

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ronbee opened this issue Jan 2, 2020 · 2 comments
Closed

pip install rii -- fails on osx with clang error #35

ronbee opened this issue Jan 2, 2020 · 2 comments

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@ronbee
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ronbee commented Jan 2, 2020

pip install rii -- fails on osx with clang error.

details:

(.venv) 馃loose-fit$ pip install rii
Collecting rii
  Using cached https://files.pythonhosted.org/packages/0a/d5/9e7a32e612b7414c272c0277add9494065e022353d1500963ec2ff0cc7f5/rii-0.2.6.tar.gz
Requirement already satisfied: pybind11>=2.3 in ./.venv/lib/python3.7/site-packages (from rii) (2.4.3)
Requirement already satisfied: nanopq in ./.venv/lib/python3.7/site-packages (from rii) (0.1.8)
Requirement already satisfied: numpy in ./.venv/lib/python3.7/site-packages (from nanopq->rii) (1.18.0)
Requirement already satisfied: scipy in ./.venv/lib/python3.7/site-packages (from nanopq->rii) (1.4.1)
Building wheels for collected packages: rii
  Building wheel for rii (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: <path>/.venv/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/setup.py'"'"'; __file__='"'"'/private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-wheel-hwefsd10 --python-tag cp37
       cwd: /private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/
  Complete output (47 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.14-x86_64-3.7
  creating build/lib.macosx-10.14-x86_64-3.7/tests
  copying tests/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/tests
  copying tests/test_rii.py -> build/lib.macosx-10.14-x86_64-3.7/tests
  copying tests/context.py -> build/lib.macosx-10.14-x86_64-3.7/tests
  creating build/lib.macosx-10.14-x86_64-3.7/rii
  copying rii/rii.py -> build/lib.macosx-10.14-x86_64-3.7/rii
  copying rii/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/rii
  running build_ext
  creating var
  creating var/folders
  creating var/folders/vt
  creating var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn
  creating var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T
  clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/opt/llvm/include -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c /var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmp8p7ifavc.cpp -o var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmp8p7ifavc.o -std=c++17
  clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/opt/llvm/include -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c /var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmpgibfqmnr.cpp -o var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmpgibfqmnr.o -fvisibility=hidden
  building 'main' extension
  creating build/temp.macosx-10.14-x86_64-3.7
  creating build/temp.macosx-10.14-x86_64-3.7/src
  clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/opt/llvm/include -UNDEBUG -I<path>/.venv/bin/../include/site/python3.7 -I<path>/.venv/bin/../include/site/python3.7 -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/main.cpp -o build/temp.macosx-10.14-x86_64-3.7/src/main.o -stdlib=libc++ -mmacosx-version-min=10.7 -DVERSION_INFO="0.2.6" -std=c++17 -fvisibility=hidden -march=native -mtune=native -Ofast
  In file included from src/main.cpp:1:
  In file included from <path>/.venv/bin/../include/site/python3.7/pybind11/pybind11.h:44:
  In file included from <path>/.venv/bin/../include/site/python3.7/pybind11/attr.h:13:
 <path>/.venv/bin/../include/site/python3.7/pybind11/cast.h:579:34: error: aligned allocation function of type 'void *(std::size_t, std::align_val_t)' is only available on macOS 10.14 or newer
                          vptr = ::operator new(type->type_size,
                                   ^
  <path>/.venv/bin/../include/site/python3.7/pybind11/cast.h:579:34: note: if you supply your own aligned allocation functions, use -faligned-allocation to silence this diagnostic
  In file included from src/main.cpp:1:
  <path>/.venv/bin/../include/site/python3.7/pybind11/pybind11.h:1008:11: error: 'operator delete' is unavailable: introduced in macOS 10.12
          ::operator delete(p, s, std::align_val_t(a));
            ^
  /usr/local/opt/llvm/bin/../include/c++/v1/new:208:74: note: 'operator delete' has been explicitly marked unavailable here
  _LIBCPP_OVERRIDABLE_FUNC_VIS _LIBCPP_AVAILABILITY_SIZED_NEW_DELETE void  operator delete(void* __p, std::size_t __sz, std::align_val_t) _NOEXCEPT;
                                                                           ^
  In file included from src/main.cpp:1:
  <path>/.venv/bin/../include/site/python3.7/pybind11/pybind11.h:1010:11: error: 'operator delete' is unavailable: introduced in macOS 10.12
          ::operator delete(p, s);
            ^
  /usr/local/opt/llvm/bin/../include/c++/v1/new:191:74: note: 'operator delete' has been explicitly marked unavailable here
  _LIBCPP_OVERRIDABLE_FUNC_VIS _LIBCPP_AVAILABILITY_SIZED_NEW_DELETE void  operator delete(void* __p, std::size_t __sz) _NOEXCEPT;
                                                                           ^
  3 errors generated.
  error: command 'clang' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for rii
  Running setup.py clean for rii
Failed to build rii
Installing collected packages: rii
    Running setup.py install for rii ... error
    ERROR: Command errored out with exit status 1:
     command: <path>/.venv/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/setup.py'"'"'; __file__='"'"'/private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-record-oy9z3y_v/install-record.txt --single-version-externally-managed --compile --install-headers <path>/.venv/bin/../include/site/python3.7/rii
         cwd: /private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/
    Complete output (42 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.14-x86_64-3.7
    creating build/lib.macosx-10.14-x86_64-3.7/tests
    copying tests/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/tests
    copying tests/test_rii.py -> build/lib.macosx-10.14-x86_64-3.7/tests
    copying tests/context.py -> build/lib.macosx-10.14-x86_64-3.7/tests
    creating build/lib.macosx-10.14-x86_64-3.7/rii
    copying rii/rii.py -> build/lib.macosx-10.14-x86_64-3.7/rii
    copying rii/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/rii
    running build_ext
    clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/opt/llvm/include -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c /var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmpabpfuxpv.cpp -o var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmpabpfuxpv.o -std=c++17
    clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/opt/llvm/include -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c /var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmpedhdv9js.cpp -o var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/tmpedhdv9js.o -fvisibility=hidden
    building 'main' extension
    creating build/temp.macosx-10.14-x86_64-3.7
    creating build/temp.macosx-10.14-x86_64-3.7/src
    clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/opt/llvm/include -UNDEBUG -I<path>/.venv/bin/../include/site/python3.7 -I<path>/.venv/bin/../include/site/python3.7 -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/main.cpp -o build/temp.macosx-10.14-x86_64-3.7/src/main.o -stdlib=libc++ -mmacosx-version-min=10.7 -DVERSION_INFO="0.2.6" -std=c++17 -fvisibility=hidden -march=native -mtune=native -Ofast
    In file included from src/main.cpp:1:
    In file included from <path>/.venv/bin/../include/site/python3.7/pybind11/pybind11.h:44:
    In file included from <path>/.venv/bin/../include/site/python3.7/pybind11/attr.h:13:
    <path>/.venv/bin/../include/site/python3.7/pybind11/cast.h:579:34: error: aligned allocation function of type 'void *(std::size_t, std::align_val_t)' is only available on macOS 10.14 or newer
                            vptr = ::operator new(type->type_size,
                                     ^
    <path>/.venv/bin/../include/site/python3.7/pybind11/cast.h:579:34: note: if you supply your own aligned allocation functions, use -faligned-allocation to silence this diagnostic
    In file included from src/main.cpp:1:
    <path>/.venv/bin/../include/site/python3.7/pybind11/pybind11.h:1008:11: error: 'operator delete' is unavailable: introduced in macOS 10.12
            ::operator delete(p, s, std::align_val_t(a));
              ^
    /usr/local/opt/llvm/bin/../include/c++/v1/new:208:74: note: 'operator delete' has been explicitly marked unavailable here
    _LIBCPP_OVERRIDABLE_FUNC_VIS _LIBCPP_AVAILABILITY_SIZED_NEW_DELETE void  operator delete(void* __p, std::size_t __sz, std::align_val_t) _NOEXCEPT;
                                                                             ^
    In file included from src/main.cpp:1:
    <path>/.venv/bin/../include/site/python3.7/pybind11/pybind11.h:1010:11: error: 'operator delete' is unavailable: introduced in macOS 10.12
            ::operator delete(p, s);
              ^
    /usr/local/opt/llvm/bin/../include/c++/v1/new:191:74: note: 'operator delete' has been explicitly marked unavailable here
    _LIBCPP_OVERRIDABLE_FUNC_VIS _LIBCPP_AVAILABILITY_SIZED_NEW_DELETE void  operator delete(void* __p, std::size_t __sz) _NOEXCEPT;
                                                                             ^
    3 errors generated.
    error: command 'clang' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: <path>/.venv/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/setup.py'"'"'; __file__='"'"'/private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-install-d76_zncf/rii/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/vt/ybml8dls2v54ywpws5zpfqgm0000gn/T/pip-record-oy9z3y_v/install-record.txt --single-version-externally-managed --compile --install-headers <path>/.venv/bin/../include/site/python3.7/rii Check the logs for full command output.
@matsui528
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It seems error by clang. I'll take a look it in the end of January hopefully. If someone knows how to fix the error, any PRs are welcome! (I don't have Mac OS...)

@matsui528 matsui528 mentioned this issue Feb 4, 2020
Merged
@matsui528
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Hi @ronbee,
I updated the library so that it works with clang on Mac. Could you try to install and run?

pip uninstall rii
pip install --no-cache-dir rii

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@ronbee @matsui528