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ChemScripts

scripts for input and output in computational chemical calculation

setup

source <DIR>/bashrc # replace the text <DIR> to this directory according to your environment

to use

bash

$ atomnum2symb 'Ca'
20
$ smiles2xyz 'CCO'
$

python

from pyg16.fchk import FCHK
fchk = FCHK('test.fchk')
fchk.calcElectronDensity([0, 0, 0])

TODO

  • g16log2value
    • eliminate title section
    • geometry
    • theory
  • g16log2xyz (wrapper of g16log2value --opt-geometry)
  • g16log2csv
  • csvsmiles2xyz
  • name2smiles
  • bohr2ang
  • ang2bohr
  • glog2prep (extend of mkresp)
  • smiles2prep
  • bkill-all
  • jdel-all