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1. ampQC ampQC Public

   Amplicon QC

   Shell

2. articSlurmy articSlurmy Public

   Bash based implementation of the ARTIC networks nCoV-2019 novel coronavirus bioinformatics protocol for Slurm clusters

   Shell 1

3. aloft aloft Public

   Aloft: a parallel implementation of the Arriba workflow

   Shell

4. MB-GATK-SGE MB-GATK-SGE Public

   SGE scripts / pipeline for running GATK/VEP on a cluster

   Shell 8 8

5. MIMIC MIMIC Public

   MInimal MethylatIon Classifier

   R

6. Types of Seq Types of Seq

   1

   csvquote pubmed_result.csv | cut -d ',' -f 1 | grep -oP '\S+-Seq\b|\S+-seq\b|\S+Seq\b|\S+seq\b|\S+\sseq\b|\S+\sSeq\b' | tr -d \"\'\(\[ | sed s/seq/Seq/ | sort | uniq -c | sort -gr