Transitional probability computation

[fullbat]

Hi,
in the "get_transition_analysis_matrices" method inside utils. py , shouldn't the odf_vertices variable be transposed to compute the pairwise distances?
The edges probabilities in the graph doesn't match the dsi-studio output and in general the diffusion data.

Thank you

[mattcieslak]

Hi,

You're right, if look at where that function is called it is using the transposed odf_vertices variable. Here is where that currently happens:

MITTENS/mittens/utils.py

Line 129 in 7721fbe

odf_vertices = m[odf_key + "_vertices"].T

.

What do you mean by the second point?