CoupledDynamicsNetworkPaper

R code for the paper "Improving pandemic mitigation policies across communities through coupled dynamics of risk perception and infection".

R code to conduct the simulations and analyse the results of the paper:

• FunctionsForHealthPaper.R is the functions used for the network modelling
• ScriptforRunningSimulations_Revised.R runs the simulations
• AnalysisScript_Revised.R analyses the results to produce the figures and tables in the manuscript and supplementary

older versions of these files are also included (prior to reviewer comments).

The folder params/ contains parameters sts and networks configuration:

• Four csvs with the parameter sets used to run the simulations and in the analysis.
• Nine .RDS in the subfolder params/networks2/, used to create the multiplex networks used in the simulations

You will first need to run the ScriptForHealthPaper2.R, which will population the folder output/, and once all simulations are done you will be able to run the script NetworksPaper1AnalysisCode_tidy.R

Rscript ScriptForHealthPaper2.R 
Rscript NetworksPaper1AnalysisCode_tidy.R