Mission: make SBML simulations simple
The idea of sbmlsim is to provide a simple abstraction layer for running simulations with SBML models in python and simplify common tasks occuring in modeling.
Simplicity
- make it easy to encode simulation experiments with a focus
on numerical ODE simulations
Simulation
- timecourse simulations
- combined simulation experiments (combination of changes)
- parameter scans
- parameter sensitivity analysis
Reproducibility
- A simplified exchange language based on JSON is part of sbmlsim
- COMBINE standards are used whenever possible.
Visualization
- plots and reports
Parallelization
- simple parallelization of multiple simulation, collection of results
Parameter fitting - helpers for running parameter fitting experiments
Unit support - full support for units on model simulations