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command used: g1=Pyntalce.importer.AdjacencyMatrix("my_directed_graph.adjm")
g1=Pyntalce.importer.AdjacencyMatrix("my_directed_graph.adjm")
error received:
--------------------------------------------------------------------------- ValueError Traceback (most recent call last) <ipython-input-221-d7b8e50b8195> in <module>() 1 from pyntacle.io_stream.importer import PyntacleImporter as Pyimp 2 ----> 3 g1=Pyimp.AdjacencyMatrix("pws_48_mass_transfer.txt") /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pyntacle/internal/io_utils.py in func_wrapper(file, *args, **kwargs) 51 raise FileNotFoundError("Input file does not exist") 52 ---> 53 return func(file, *args, **kwargs) 54 55 return func_wrapper /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pyntacle/internal/io_utils.py in func_wrapper(file, sep, *args, **kwargs) 97 raise ValueError("\"sep\" must be a string {} found".format(type(sep).__name__)) 98 ---> 99 return func(file, sep, *args, **kwargs) 100 101 return func_wrapper /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pyntacle/io_stream/importer.py in AdjacencyMatrix(file, sep, header) 140 f.index = f.index.map(str) #force index to string, in case is not identified properly 141 f = f.reindex(sorted(f.columns), axis=1) # sort columns alphabetically --> 142 f = f.reindex(sorted(f.index), axis=0) # sort indices alphabetically 143 node_names = f.columns.values.tolist() 144 /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/util/_decorators.py in wrapper(*args, **kwargs) 307 @wraps(func) 308 def wrapper(*args, **kwargs) -> Callable[..., Any]: --> 309 return func(*args, **kwargs) 310 311 kind = inspect.Parameter.POSITIONAL_OR_KEYWORD /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/frame.py in reindex(self, *args, **kwargs) 4034 kwargs.pop("axis", None) 4035 kwargs.pop("labels", None) -> 4036 return super().reindex(**kwargs) 4037 4038 def drop( /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/generic.py in reindex(self, *args, **kwargs) 4460 # perform the reindex on the axes 4461 return self._reindex_axes( -> 4462 axes, level, limit, tolerance, method, fill_value, copy 4463 ).__finalize__(self, method="reindex") 4464 /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/frame.py in _reindex_axes(self, axes, level, limit, tolerance, method, fill_value, copy) 3881 if index is not None: 3882 frame = frame._reindex_index( -> 3883 index, method, copy, level, fill_value, limit, tolerance 3884 ) 3885 /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/frame.py in _reindex_index(self, new_index, method, copy, level, fill_value, limit, tolerance) 3903 copy=copy, 3904 fill_value=fill_value, -> 3905 allow_dups=False, 3906 ) 3907 /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/generic.py in _reindex_with_indexers(self, reindexers, fill_value, copy, allow_dups) 4528 fill_value=fill_value, 4529 allow_dups=allow_dups, -> 4530 copy=copy, 4531 ) 4532 # If we've made a copy once, no need to make another one /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/internals/managers.py in reindex_indexer(self, new_axis, indexer, axis, fill_value, allow_dups, copy, consolidate) 1274 # some axes don't allow reindexing with dups 1275 if not allow_dups: -> 1276 self.axes[axis]._can_reindex(indexer) 1277 1278 if axis >= self.ndim: /home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pandas/core/indexes/base.py in _can_reindex(self, indexer) 3287 # trying to reindex on an axis with duplicates 3288 if not self.is_unique and len(indexer): -> 3289 raise ValueError("cannot reindex from a duplicate axis") 3290 3291 def reindex(self, target, method=None, level=None, limit=None, tolerance=None): ValueError: cannot reindex from a duplicate axis
The text was updated successfully, but these errors were encountered:
can you share here the "pws_48_mass_transfer.txt" file?
Sorry, something went wrong.
of course, here the file pws_48_mass_transfer.txt
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command used:
g1=Pyntalce.importer.AdjacencyMatrix("my_directed_graph.adjm")
error received:
The text was updated successfully, but these errors were encountered: