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ERROR: MDTraj.test.test_hdf5.test_topology
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Traceback (most recent call last):
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/home/rmcgibbo/local/mdtraj/MDTraj/test/test_hdf5.py", line 106, in test_topology
f.topology = top
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/hdf5.py", line 73, in wrapper
return f(*args, **kwargs)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/hdf5.py", line 258, in topology
self._handle.createArray(where='/', name='topology', object=[str(json.dumps(topology_dict))])
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/tables/_past.py", line 35, in oldfunc
return obj(*args, **kwargs)
TypeError: create_array() got an unexpected keyword argument 'object'
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ERROR: Failure: TypeError (create_array() got an unexpected keyword argument 'object')
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Traceback (most recent call last):
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/nose/loader.py", line 253, in generate
for test in g():
File "/home/rmcgibbo/local/mdtraj/MDTraj/test/test_io.py", line 125, in test_groups
f.createArray(where='/mygroup', name='myarray', object=x)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/tables/_past.py", line 35, in oldfunc
return obj(*args, **kwargs)
TypeError: create_array() got an unexpected keyword argument 'object'
======================================================================
ERROR: Failure: TypeError (create_array() got an unexpected keyword argument 'object')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/nose/loader.py", line 253, in generate
for test in g():
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/numpy/testing/decorators.py", line 153, in skipper_gen
for x in f(*args, **kwargs):
File "/home/rmcgibbo/local/mdtraj/MDTraj/test/test_reporter.py", line 67, in test_reporter
simulation.step(100)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/simtk/openmm/app/simulation.py", line 127, in step
reporter.report(self, state)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/reporters/hdf5reporter.py", line 172, in report
self._initialize(simulation)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/reporters/hdf5reporter.py", line 126, in _initialize
self._traj_file.topology = simulation.topology
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/hdf5.py", line 73, in wrapper
return f(*args, **kwargs)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/hdf5.py", line 258, in topology
self._handle.createArray(where='/', name='topology', object=[str(json.dumps(topology_dict))])
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/tables/_past.py", line 35, in oldfunc
return obj(*args, **kwargs)
TypeError: create_array() got an unexpected keyword argument 'object'
======================================================================
ERROR: Failure: TypeError (create_array() got an unexpected keyword argument 'object')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/nose/loader.py", line 253, in generate
for test in g():
File "/home/rmcgibbo/local/mdtraj/MDTraj/test/test_trajectory.py", line 78, in test_box_load_save
t.save(temp_fn)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/trajectory.py", line 1042, in save
return saver(filename)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/trajectory.py", line 1057, in save_hdf
f.topology = self.topology
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/hdf5.py", line 73, in wrapper
return f(*args, **kwargs)
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/mdtraj-0.2-py2.7-linux-x86_64.egg/mdtraj/hdf5.py", line 258, in topology
self._handle.createArray(where='/', name='topology', object=[str(json.dumps(topology_dict))])
File "/home/rmcgibbo/envs/latest/lib/python2.7/site-packages/tables/_past.py", line 35, in oldfunc
return obj(*args, **kwargs)
TypeError: create_array() got an unexpected keyword argument 'object'
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: