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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: inferCSN
Title: Inferring Cell-Specific Gene Regulatory Network
Version: 2.0.0
Date: 2024-5-7
Authors@R:
person("Meng", "Xu", email = "mengxu98@qq.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8300-1054"))
Maintainer: Meng Xu <mengxu98@qq.com>
Description: An package for inferring cell-type-specific gene regulatory networks from single-cell omics data.
License: MIT + file LICENSE
URL: https://mengxu98.github.io/inferCSNplus/
BugReports: https://github.com/mengxu98/inferCSNplus/issues
Depends:
R (>= 3.3.0)
Imports:
ComplexHeatmap,
doParallel,
dplyr,
foreach,
GenomicRanges,
ggnetwork,
ggplot2,
ggraph,
Matrix,
methods,
parallel,
patchwork,
progress,
purrr,
Rcpp,
RcppArmadillo,
sparseMatrixStats,
slam,
Signac,
Seurat,
SeuratObject,
tidygraph,
stats,
utils
Suggests:
BSgenome.Hsapiens.UCSC.hg38,
cli,
circlize,
chromVAR,
FNN,
gam,
gatepoints,
gganimate,
gtools,
grDevices,
motifmatchr,
network,
igraph,
plotly,
precrec,
pROC,
scales,
slingshot,
testthat (>= 3.0.0),
bayestestR,
brms,
cowplot,
glmnetUtils,
gmodels,
gridExtra,
grr,
irlba,
pbapply,
plyr,
reshape2,
reticulate,
viridis,
xgboost,
pheatmap,
tidyselect,
uwot,
RColorBrewer,
Rtsne,
IRanges,
S4Vectors,
ggpointdensity,
pals,
tibble,
tidyr,
stringi,
stringr,
fields,
ggExtra,
ggpubr,
modeltools,
topicmodels,
RTransferEntropy,
proxy,
RANN
LinkingTo:
Rcpp,
RcppArmadillo
Config/Needs/website: mengxu98/mxtemplate
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
LazyDataCompression: gzip
RoxygenNote: 7.3.1
Language: en-US