cluster_config

[SilasK]

The ~/.config/snakemake/cluster/cluster_config.yaml should looke like that

## This is a yaml file, defining options for specific rules or by default.
## The '#' defines a comment.
## the two spaces at the beginning of rows below rulenames are important.
## For more information see https://snakemake.readthedocs.io/en/stable/executing/cluster-cloud.html#cluster-execution

# Overwrite/Define arguments for all rules
__default__:
  account: project_2004930


rename_contigs:
  threads: 2



#   queue: normal



# You can  overwrite values for specific rules
rulename:
  queue: long
  account: ""
  time_min:  # min
  threads:

[Sewunet-Abera]

I configured that but while running atlas I got this error. Though the dryrun completes the true run never completes. Thanks for helping"

FileNotFoundError: [Errno 2] No such file or directory: '/users/student231/.config/snakemake/sewunet/cluster_config.yaml'
[2021-09-28 12:28 CRITICAL] Command 'snakemake --snakefile /scratch/project_2004930/atlas/atlas/Snakefile --directory /users/student231/ProjectFolder --jobs 10 --rerun-incomplete --configfile '/users/student231/ProjectFolder/config.yaml' --nolock --profile cluster --use-conda --conda-prefix /scratch/project_2004930/databases/conda_envs --scheduler greedy all --keep-going ' returned non-zero exit status 1.