Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

errors when run assebly #11

Closed
nganguyen89 opened this issue Sep 27, 2021 · 0 comments
Closed

errors when run assebly #11

nganguyen89 opened this issue Sep 27, 2021 · 0 comments

Comments

@nganguyen89
Copy link

I got this error when run atlas run assembly --profile cluster (with -j 10 or not)
sbatch: error: Batch job submission failed: Job violates accounting/QOS policy (job submit limit, user's size and/or time limits)

Error submitting jobscript (exit code 1):
Job can't be submitted
sbatch: error: AssocMaxSubmitJobLimit
sbatch: error: Batch job submission failed: Job violates accounting/QOS policy (job submit limit, user's size and/or time limits)

Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Note the path to the log file for debugging.
Documentation is available at: https://metagenome-atlas.readthedocs.io
Issues can be raised at: https://github.com/metagenome-atlas/atlas/issues
Complete log: /users/student221/First_Run/.snakemake/log/2021-09-27T150916.466418.snakemake.log
[2021-09-27 15:09 CRITICAL] Command 'snakemake --snakefile /scratch/project_2004930/miniconda3/envs/atlasenv/lib/python3.8/site-packages/atlas/Snakefile --directory /users/student221/First_Run --jobs 10 --rerun-incomplete --configfile '/users/student221/First_Run/config.yaml' --nolock --profile cluster --use-conda --conda-prefix /scratch/project_2004930/databases/conda_envs --scheduler greedy assembly ' returned non-zero exit status 1.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant