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I got this error when run atlas run assembly --profile cluster (with -j 10 or not)
sbatch: error: Batch job submission failed: Job violates accounting/QOS policy (job submit limit, user's size and/or time limits)
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Note the path to the log file for debugging.
Documentation is available at: https://metagenome-atlas.readthedocs.io
Issues can be raised at: https://github.com/metagenome-atlas/atlas/issues
Complete log: /users/student221/First_Run/.snakemake/log/2021-09-27T150916.466418.snakemake.log
[2021-09-27 15:09 CRITICAL] Command 'snakemake --snakefile /scratch/project_2004930/miniconda3/envs/atlasenv/lib/python3.8/site-packages/atlas/Snakefile --directory /users/student221/First_Run --jobs 10 --rerun-incomplete --configfile '/users/student221/First_Run/config.yaml' --nolock --profile cluster --use-conda --conda-prefix /scratch/project_2004930/databases/conda_envs --scheduler greedy assembly ' returned non-zero exit status 1.
The text was updated successfully, but these errors were encountered:
I got this error when run atlas run assembly --profile cluster (with -j 10 or not)
sbatch: error: Batch job submission failed: Job violates accounting/QOS policy (job submit limit, user's size and/or time limits)
Error submitting jobscript (exit code 1):
Job can't be submitted
sbatch: error: AssocMaxSubmitJobLimit
sbatch: error: Batch job submission failed: Job violates accounting/QOS policy (job submit limit, user's size and/or time limits)
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Note the path to the log file for debugging.
Documentation is available at: https://metagenome-atlas.readthedocs.io
Issues can be raised at: https://github.com/metagenome-atlas/atlas/issues
Complete log: /users/student221/First_Run/.snakemake/log/2021-09-27T150916.466418.snakemake.log
[2021-09-27 15:09 CRITICAL] Command 'snakemake --snakefile /scratch/project_2004930/miniconda3/envs/atlasenv/lib/python3.8/site-packages/atlas/Snakefile --directory /users/student221/First_Run --jobs 10 --rerun-incomplete --configfile '/users/student221/First_Run/config.yaml' --nolock --profile cluster --use-conda --conda-prefix /scratch/project_2004930/databases/conda_envs --scheduler greedy assembly ' returned non-zero exit status 1.
The text was updated successfully, but these errors were encountered: