MinIONQC(2) --------
We need to run Rscript with MinIONQC.R:
MinIONQC.R
... and specify the following options:
What? | parameter | Our value |
---|---|---|
The input directory | -i | ~/workdir/data_artic/basecall_tiny/ |
The output directory | -o | ~/workdir/data_artic/MinIONQC/ |
The number of processors to be used | -p | 14 |
The complete command is:
cd ~/workdir/data_artic/
MinIONQC.R -i basecall_tiny -o MinIONQC -p 14
This will create several analysis plots. After that, you can load the plots in your web browser by using a file browser. You could use:
firefox ~/workdir/data_artic/MinIONQC/basecall_tiny/*.png
to load all images at once in firefox.
Again, check out the corresponding home page to learn more about all generated results: https://github.com/roblanf/minion_qc