testing.yml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: CI

on:
  push:
    branches: [ "master" ]
  pull_request:
    branches: [ "master" ]

permissions:
  contents: read

jobs:
  tests:
    name: "Python ${{ matrix.python-version }}"
    runs-on: ${{ matrix.os }}

    strategy:
      matrix:
        os: [macos-12, ubuntu-latest]
        python-version: ["3.9", "3.10", "3.11", "3.12"]

    steps:
      - uses: "actions/checkout@v3"
        with:
          fetch-depth: 0

      # Setup env
      - uses: "actions/setup-python@v3"
        with:
            python-version: "${{ matrix.python-version }}"

      - name: "Install dependencies on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
        run: |
          python --version
          python -m pip install --upgrade pip
          pip install --upgrade pip wheel setuptools flit
          flit install
      
      - name: "Generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
        run: |
          pip install pytest pytest-cov
          pytest --cov=graphbin2 --cov-report=xml --cov-append

      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v4.0.1
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          slug: metagentools/GraphBin2