Code disponibilized by: Daniel Saad and Mauricio Ayala-Rincón

danielsaad88@gmail.com ayala@unb.br

In order to compile the source code, just do:

$ make

This will generate 3 executables:

1. index - Our index.

2. control - A program that uses libdivsufsort for comparison with our index.

3. textGenerator - A program responsible to generate well formed files.

A well formed file, which is a text file that has the last symbol lexicographically smaller than the others. For example:

actagaccat$

Here we show how to run the programs.

1. index To create the index one must execute:

$ ./index -create

To search for ocurrences, one must do:

$ ./index -search

2. control

Same semantic from 1).

3. textGenerator

To generate a DNA well formed text, one must use:

$ textGenerator > dnaText.txt