github_repos.json

[
    {
        "URL": "https://github.com/astropy/astropy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    21
                ]
            ]
        },
        "title": "Main Astropy repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/louismullie/stanford-core-nlp",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    30
                ]
            ]
        },
        "title": "Ruby bindings to the Stanford Core NLP tools (English, French, German).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CeON/CoAnSys",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    20
                ]
            ]
        },
        "title": "Content Analysis System is a framework for mining scientific publications using Apache Hadoop.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/xuanxu/nimbus",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    12
                ]
            ]
        },
        "title": "Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vsbuffalo/scythe",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    3
                ]
            ]
        },
        "title": "A 3'-end adapter contaminant trimmer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/realXtend/doc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    22
                ]
            ]
        },
        "title": "Auxiliary documentation for the realXtend architecture",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brandon-rhodes/pyephem",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    25
                ]
            ]
        },
        "title": "Scientific-grade astronomy routines for Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dfm/emcee",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    7
                ]
            ]
        },
        "title": "The Python ensemble sampling toolkit for affine-invariant MCMC",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/weecology/retriever",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    28
                ]
            ]
        },
        "title": "Quickly download, clean up, and install ecological datasets into a database management system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/elifesciences/lens",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    4
                ]
            ]
        },
        "title": "A novel way of seeing content",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nzakas/computer-science-in-javascript/",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    12
                ]
            ]
        },
        "title": "Collection of classic computer science paradigms, algorithms, and approaches written in JavaScript. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bioruby/bioruby",
        "issued": {
            "date-parts": [
                [
                    2008,
                    6,
                    18
                ]
            ]
        },
        "title": "bioruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jandot/ruby-ensembl-api",
        "issued": {
            "date-parts": [
                [
                    2008,
                    5,
                    21
                ]
            ]
        },
        "title": "A ruby API to the Ensembl database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/materialsproject/pymatgen",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    23
                ]
            ]
        },
        "title": "Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/activepapers/activepapers-python",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    27
                ]
            ]
        },
        "title": "Python edition of ActivePapers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SciRuby/sciruby",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    6
                ]
            ]
        },
        "title": "Tools for scientific computation in Ruby/Rails",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MartinPaulEve/meTypeset",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    5
                ]
            ]
        },
        "title": "meTypeset is a tool to covert from Microsoft Word .docx format to NLM/JATS-XML for scholarly/scientific article typesetting.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mosaic-data-model/mosaic-python",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    9
                ]
            ]
        },
        "title": "Mosaic Python library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cpfaff/Open-Science-Paper",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    8
                ]
            ]
        },
        "title": "Status: Usable (Latest stable version 0.9.2)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openmicroscopy/bioformats",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    4
                ]
            ]
        },
        "title": "Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the  Open Microscopy Environment (particularly  UW-Madison LOCI and  Glencoe Software). Bio-Formats is released under the  GNU General Public License (GPL); commercial licenses are available from  Glencoe Software. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Sage-Bionetworks/rSynapseClient",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    28
                ]
            ]
        },
        "title": "The R programmatic interface to Synapse services",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/harthur/brain",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    10
                ]
            ]
        },
        "title": "Neural networks in JavaScript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arfon/fidgit",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    19
                ]
            ]
        },
        "title": "An ungodly union of GitHub and Figshare",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ramnathv/rCharts",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    10
                ]
            ]
        },
        "title": "Interactive JS Charts from R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ajdamico/usgsd",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    4
                ]
            ]
        },
        "title": "Analyze Survey Data for Free with the R Language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/psychopy/psychopy",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    1
                ]
            ]
        },
        "title": "For running psychology and neuroscience experiments",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/timeu/GWAPP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    12
                ]
            ]
        },
        "title": "GWAPP ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PopulationGenetics/amptools",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    10
                ]
            ]
        },
        "title": "Tools for dealing with amplicon experiments",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arrigonialberto86/ruby-band",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    24
                ]
            ]
        },
        "title": "Machine learning and data mining algorithms for JRuby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/qbilius/psychopy_ext",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    13
                ]
            ]
        },
        "title": "A framework for a rapid reproducible design, analysis and plotting of experiments in behavioral neuroscience and psychology.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adarob/eXpress",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    9
                ]
            ]
        },
        "title": "Streaming fragment assignment and quantification for high-throughput sequencing.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sunpy/sunpy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    6
                ]
            ]
        },
        "title": "SunPy - Python for solar physics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gdevenyi/lattice_matcher",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    10
                ]
            ]
        },
        "title": "Software for calculating epitaxial lattice matches considering symmetries of different crystal systems",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/root-mirror/root",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    27
                ]
            ]
        },
        "title": "Mirror of official ROOT git repository located at ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/svenkreiss/decouple/",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    30
                ]
            ]
        },
        "title": "Decouple and recouple.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/coq/coq",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    17
                ]
            ]
        },
        "title": "Coq is a formal proof management system. It provides a formal language to write mathematical definitions, executable algorithms and theorems together with an environment for semi-interactive development of machine-checked proofs. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cbmi/harvest/",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    19
                ]
            ]
        },
        "title": "Harvest CLI and starter project template",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lintool/twitter-tools",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    14
                ]
            ]
        },
        "title": "Twitter Tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jstjohn/SimSeq",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    24
                ]
            ]
        },
        "title": "An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/blackrim/treePL",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    15
                ]
            ]
        },
        "title": "Phylogenetic penalized likelihood",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cloudera/impala",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    18
                ]
            ]
        },
        "title": "Real-time Query for Hadoop",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cbmi/varify",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    4
                ]
            ]
        },
        "title": "Clinical DNA Sequencing Analysis and Data Warehouse",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/scipy/scipy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    9
                ]
            ]
        },
        "title": "Scipy main repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/imeji-community/Imeji",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    31
                ]
            ]
        },
        "title": "imeji is a scientific multimedia data repository with dedicated metadata management. A detailed description as well as an installation guide and contact informations can be found here:",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mwoodbri/MRIdb",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    5
                ]
            ]
        },
        "title": "An end-to-end data management system for MRI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeroenjanssens/data-science-toolbox",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    16
                ]
            ]
        },
        "title": "A collection of command-line tools that facilitate the obtaining, scrubbing, and exploring of data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/biojs/biojs",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    2
                ]
            ]
        },
        "title": "A library of JavaScript components to represent biological data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/scikit-learn/scikit-learn",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    17
                ]
            ]
        },
        "title": "scikit-learn: machine learning in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openml/OpenML",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    11
                ]
            ]
        },
        "title": "Open Machine Learning",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/unconed/MathBox.js",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    11
                ]
            ]
        },
        "title": "MathBox is a (work in progress) library for making presentation-quality math diagrams in WebGL.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wanderine/BROCCOLI/",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    30
                ]
            ]
        },
        "title": "BROCCOLI: An open source multi-platform software for parallel analysis of fMRI data on many-core CPUs and GPUs.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/unidata/thredds",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    1
                ]
            ]
        },
        "title": "Thredds and netCDF-Java (CDM)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeetsukumaran/DendroPy",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    6
                ]
            ]
        },
        "title": "A Python library for phylogenetic scripting, simulation, data processing and manipulation.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/phylogeography/SPREAD",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    2
                ]
            ]
        },
        "title": "Spatial Phylogenetic  Reconstruction of Evolutionary Dynamics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mattbierbaum/moshpits",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    16
                ]
            ]
        },
        "title": "a simple nbody for the moshpits project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brendano/ark-tweet-nlp",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    15
                ]
            ]
        },
        "title": "CMU ARK Twitter Part-of-Speech Tagger",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pydata/pandas",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    24
                ]
            ]
        },
        "title": "Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zuhao/plotrb",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    15
                ]
            ]
        },
        "title": "A plotting library in Ruby built on top of Vega and D3.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/macourtney/Conjure",
        "issued": {
            "date-parts": [
                [
                    2009,
                    6,
                    1
                ]
            ]
        },
        "title": "A Rails like framework for Clojure.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hlship/cascade",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    3
                ]
            ]
        },
        "title": "Simple, fast, easy web applications in idiomatic Clojure.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/weavejester/compojure",
        "issued": {
            "date-parts": [
                [
                    2008,
                    5,
                    1
                ]
            ]
        },
        "title": "A concise routing library for Ring/Clojure",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brentp/methylcode",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    28
                ]
            ]
        },
        "title": "Alignment and Tabulation of BiSulfite Treated Reads",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vangelisv/thea",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    3
                ]
            ]
        },
        "title": "OWL2 library for Prolog",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/itmat/circadb",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    13
                ]
            ]
        },
        "title": "Database of circadian rhythms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mmmikael/vlfeat",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    18
                ]
            ]
        },
        "title": "An open library of computer vision algorithms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kriszyp/multi-node",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    15
                ]
            ]
        },
        "title": "Multi-node provides launching of multiple NodeJS processes for TCP/HTTP serving",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/faircloth-lab/phyluce",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    1
                ]
            ]
        },
        "title": "phylogenetic inference from ultraconserved elements",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/faircloth-lab/illumiprocessor",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    3
                ]
            ]
        },
        "title": "pre-process illumina reads",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sympy/sympy",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    30
                ]
            ]
        },
        "title": "A computer algebra system written in pure Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ether/pad",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    13
                ]
            ]
        },
        "title": "Etherpad Open-Source Repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NDN-Routing/ndnSIM",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    1
                ]
            ]
        },
        "title": "ndnSIM: NS-3 based NDN simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ekg/freebayes",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    13
                ]
            ]
        },
        "title": "Bayesian haplotype-based polymorphism discovery and genotyping.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jstjohn/SeqPrep",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    10
                ]
            ]
        },
        "title": "Tool for stripping adaptors and/or merging paired reads with overlap into single reads.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chapmanb/bcbb",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    9
                ]
            ]
        },
        "title": "Incubator for useful bioinformatics code, primarily in Python and R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sbotond/phylosim",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    27
                ]
            ]
        },
        "title": "An R package for the Monte Carlo simulation of sequence evolution",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/datagraph/rdfgrid",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    28
                ]
            ]
        },
        "title": "RDFgrid is a framework for batch-processing RDF data with Hadoop and Amazon Elastic MapReduce.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jws7/CloudMonitor",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    23
                ]
            ]
        },
        "title": "Software based Energy Monitor for Cloud Computing - based on SIGAR",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aritter/twitter_nlp",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    16
                ]
            ]
        },
        "title": "Twitter NLP Tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/netiru/apiblender",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    10
                ]
            ]
        },
        "title": "Interact easily with many Web services",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tanghaibao/bio-pipeline",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    27
                ]
            ]
        },
        "title": "My collection of light bioinformatics analysis pipelines for specific tasks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/grammarware/slps",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    10
                ]
            ]
        },
        "title": "Software Language Processing Suite",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/TiarkRompf/scala-virtualized",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    16
                ]
            ]
        },
        "title": "The Scala Programming Language: Virtualized",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ankitrohatgi/WebPlotDigitizer",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    25
                ]
            ]
        },
        "title": "HTML5 based online tool to extract numerical data from plot images.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brentp/gobe",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    25
                ]
            ]
        },
        "title": "a fast, interactive, light-weight, customizable, web-based comparative genomics viewer with simple text input format.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/apache/httpd",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    20
                ]
            ]
        },
        "title": "Mirror of Apache HTTP Server",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brentp/combined-pvalues",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    20
                ]
            ]
        },
        "title": "combining p-values using modified stouffer-liptak for spatially correlated results (probes)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Vizzuality/GeoCAT",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    16
                ]
            ]
        },
        "title": "Red list assessment tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AlexanderPanchenko/Serelex",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    21
                ]
            ]
        },
        "title": "A tool for semantic relation extraction. The program finds pairs of semantically related words based on the text definitions coming from the Wikipedia articles (other texts may be also used). The extraction method implemented in this system is based on three similarity measures (cosine, gloss overlap, and Karaulov's measure) between texts and two nearest-neighbor algorithms (KNN and Mutual KNN). The tool is a cross-platform console application.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/yihui/formatR",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    16
                ]
            ]
        },
        "title": "Format R Code Automatically",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/EBI-Metabolights/ISAcreatorPlugins",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    3
                ]
            ]
        },
        "title": "Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/quwubin/MFEprimer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    22
                ]
            ]
        },
        "title": "MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/carhartl/jquery-cookie",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    3
                ]
            ]
        },
        "title": "A simple, lightweight jQuery plugin for reading, writing and deleting cookies",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kobush/ManagedOpenNI",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    16
                ]
            ]
        },
        "title": "Managed wrapper for OpenNI libraries",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lg/murder",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    21
                ]
            ]
        },
        "title": "Large scale server deploys using BitTorrent and the BitTornado library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/joshua-decoder/joshua",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    20
                ]
            ]
        },
        "title": "Joshua Statistical Machine Translation Toolkit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hpiwowar/pypub",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    15
                ]
            ]
        },
        "title": "Python code for collecting and processing research data for biomedical bibliometric analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/znag/bootRes",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    13
                ]
            ]
        },
        "title": "bootstrapped response and correlation functions in R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DisplayCast/OSX-IOS",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    17
                ]
            ]
        },
        "title": "DisplayCast port to OSX",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ofTheo/ofxKinect",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    12
                ]
            ]
        },
        "title": "legacy openFrameworks wrapper for the xbox kinect (OF pre-0.8.0+ only) - ofxKinect is now included and is being maintained in OF releases",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/OpenKinect/libfreenect",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    12
                ]
            ]
        },
        "title": "Drivers and libraries for the Xbox Kinect device on WIndows, Linux, and OS X",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wf4ever/ro-catalogue",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    14
                ]
            ]
        },
        "title": "A collection of ROs for development and testing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wf4ever/ro-manager",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    23
                ]
            ]
        },
        "title": "Research Object manager command line tool(s) and web service",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cplaisier/miRvestigator_www",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    23
                ]
            ]
        },
        "title": "A web server version of the miRvestigator framework.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gem/oq-engine",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    28
                ]
            ]
        },
        "title": "OpenQuake's Engine for Seismic Hazard and Risk Analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gem/opensha",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    21
                ]
            ]
        },
        "title": "Raw OpenSHA source code from USGS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/micheldumontier/php-lib",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    4
                ]
            ]
        },
        "title": "A PHP utility library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cfedermann/Appraise",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    23
                ]
            ]
        },
        "title": "Appraise evaluation system for manual evaluation of machine translation output",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ngscomparison/NGS-Benchtop-Comparison",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    30
                ]
            ]
        },
        "title": "Repository for scripts and data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/devrkel/IPRStats",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    1
                ]
            ]
        },
        "title": "A statistical tool that eases the analysis of InterProScan results by generating charts and tables with links to additional information.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JeffreyRacine/R-Package-np",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    26
                ]
            ]
        },
        "title": "R package np (Nonparametric Kernel Smoothing Methods for Mixed Data Types)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/carlosp420/VoSeq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    9
                ]
            ]
        },
        "title": "VoSeq is a database to store voucher and sequence data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lianqiw/maos",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    28
                ]
            ]
        },
        "title": "Multithreaded Adaptive Optics Simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PBR/Marker2Sequence",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    12
                ]
            ]
        },
        "title": "Explore QTL regions for candidate genes.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PBR/gff2RDF",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    10
                ]
            ]
        },
        "title": "Convert the genome annotation of some crops into RDF",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AlistairBoettiger/Image_Analysis",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    31
                ]
            ]
        },
        "title": "my Open Source image analysis code.  ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mozilla/pjs",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    27
                ]
            ]
        },
        "title": "A git clone of mozilla-central, with full history.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nikomatsakis/patpar",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    27
                ]
            ]
        },
        "title": "Java prototype of the Patient Parent model for parallel programming",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PMBio/peer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    28
                ]
            ]
        },
        "title": "A factor analysis package",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tlozoot/experigen",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    29
                ]
            ]
        },
        "title": "A framework for creating linguistic experiments",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/azavea/numeric",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    16
                ]
            ]
        },
        "title": "Numeric trait for Scala which is specialized and has other improvements.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shravanmn/Yahoo_LDA",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    25
                ]
            ]
        },
        "title": "Yahoo!'s topic modelling framework using Latent Dirichlet Allocation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cmader/qSKOS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    21
                ]
            ]
        },
        "title": "Vocabulary quality assessment tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/loopasam/Brain",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    12
                ]
            ]
        },
        "title": "Library for biomedical knowledge manipulation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bio2rdf/bio2rdf-scripts",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    14
                ]
            ]
        },
        "title": "Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/trec-kba/kba-corpus",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    6
                ]
            ]
        },
        "title": "Tools for working with TREC KBA Corpora",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gturco/find_cns",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    9
                ]
            ]
        },
        "title": "find conserved non-coding sequences (CNS)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ISA-tools/Risa",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    7
                ]
            ]
        },
        "title": "Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alunny/pg-training",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    16
                ]
            ]
        },
        "title": "Tutorial materials for PhoneGap training",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/purplecabbage/SujiQ",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    16
                ]
            ]
        },
        "title": "Real App Demo using phonegap + glovebox + xui",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/basp-group/sopt",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    22
                ]
            ]
        },
        "title": "SOPT: Sparse OPTimisation.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ucdavis-bioinformatics/scythe",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    9
                ]
            ]
        },
        "title": "A 3'-end adapter contaminant trimmer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ehec-outbreak-crowdsourced/BGI-data-analysis",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    3
                ]
            ]
        },
        "title": "assemblies, annotations, further analysis on sequenced strains from the EHEC outbreak",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ash-dieback-crowdsource/data",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    16
                ]
            ]
        },
        "title": "Repository for crowd-sourced data from genomics analysis of the UK ash dieback (Chalara fraxinea) outbreak 2012",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gsdlab/clafer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    21
                ]
            ]
        },
        "title": "Clafer is a lightweight modeling language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gsdlab/ClaferConfigurator",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    14
                ]
            ]
        },
        "title": "An interactive, web-based, configurator for Clafer models.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bhavanaananda/datafinder",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    16
                ]
            ]
        },
        "title": "DataFinder",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jff/TeLLer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    23
                ]
            ]
        },
        "title": "TeLLer is a collection of tools that explore the use of linear logic applied to narrative generation and story telling.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ISA-tools/OntoMaton",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    10
                ]
            ]
        },
        "title": "OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mbostock/topojson",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    16
                ]
            ]
        },
        "title": "An extension to GeoJSON that encodes topology.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mbostock/us-atlas",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    8
                ]
            ]
        },
        "title": "Roll your own TopoJSON from the National Atlas and U.S. Census Bureau.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/livenson/vcdm",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    15
                ]
            ]
        },
        "title": "CDMI-Proxy provides CDMI-compliant proxy server to public cloud backends.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/redbo/cloudfuse",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    3
                ]
            ]
        },
        "title": "Filesystem (fuse) implemented on Mosso's Cloud Files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Attempto/ACE-in-GF",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    14
                ]
            ]
        },
        "title": "Attempto Controlled English in Grammatical Framework",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/eschulte/CiSE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    3
                ]
            ]
        },
        "title": "short article introducing Org-mode's application to RR",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/apache/giraph",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    28
                ]
            ]
        },
        "title": "Mirror of Apache Giraph",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/xslogic/phoebus",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    24
                ]
            ]
        },
        "title": "Phoebus is a distributed framework for large scale graph processing written in Erlang.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tblobaum/redis-graph",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    9
                ]
            ]
        },
        "title": "a graph database using redis sets",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nvasudevan/sinbad",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    30
                ]
            ]
        },
        "title": "Search-Based grammar Ambiguity Detection (SinBAD)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tr4n2uil/cirrusbolt",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    30
                ]
            ]
        },
        "title": "2011 -- Service Computing Platform -- Foundation Engine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lspecia/QualityEstimation",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    16
                ]
            ]
        },
        "title": "WMT-2012 shared task on Quality Estimation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/patscott/pippi",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    20
                ]
            ]
        },
        "title": "Pippi: parse it, plot it.  A program for operating on MCMC chains and related lists of samples from a function or distribution.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/saga-project/BigJob",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    3
                ]
            ]
        },
        "title": "SAGA-based Pilot-Job Implementation for Compute and Data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adamilab/eos",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    27
                ]
            ]
        },
        "title": "Evolution of Swarming platform with predator confusion implemented.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adamilab/eos-data",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    2
                ]
            ]
        },
        "title": "Data for the paper, \"Predator confusion is sufficient to evolve swarming behavior.\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cfedermann/mt-serverland",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    19
                ]
            ]
        },
        "title": "Open Server Architecture for Machine Translation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tinkerpop/blueprints",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    8
                ]
            ]
        },
        "title": "A Property Graph Model Interface",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/OpenNI/OpenNI",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    8
                ]
            ]
        },
        "title": "OpenNI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/yihui/animation",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    16
                ]
            ]
        },
        "title": "A gallery of animations in statistics and utilities to create animations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Flamefork/fleet",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    28
                ]
            ]
        },
        "title": "Templating System for Clojure",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cgrand/enlive",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    18
                ]
            ]
        },
        "title": "a selector-based (à la CSS) templating and transformation system for Clojure",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/semsol/arc2",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    12
                ]
            ]
        },
        "title": "ARC RDF Classes for PHP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cmader/qSKOS4rb",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    22
                ]
            ]
        },
        "title": "qSKOS version for ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/eagereyes/ParVisMT",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    16
                ]
            ]
        },
        "title": "Multi-touch interaction for brushing in Parallel Coordinates",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/richfitz/diversitree",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    20
                ]
            ]
        },
        "title": "diversitree: comparative phylogenetic analyses of diversification",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/befdata/befdata",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    17
                ]
            ]
        },
        "title": "the befdata portal",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nimbusproject/nimbus",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    29
                ]
            ]
        },
        "title": "Nimbus - Open Source Cloud Computing Software - 100% Apache2 licensed",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mlangill/microbedb",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    6
                ]
            ]
        },
        "title": "Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/johang88/haskellinjavascript",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    16
                ]
            ]
        },
        "title": "A haskell interpreter in javascript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vladimirias/Foundations",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    4
                ]
            ]
        },
        "title": "Development of the univalent foundations of mathematics in Coq",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dongourley/fedora_rest",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    20
                ]
            ]
        },
        "title": "Drupal module providing a programming interface to invoke Fedora Commons REST methods",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/robmonie/jquery-week-calendar",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    26
                ]
            ]
        },
        "title": "Now actively maintained in the following fork - https://github.com/themouette/jquery-week-calendar",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kyeongsoo/inet-hnrl",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    6
                ]
            ]
        },
        "title": "INET with various PON and WLAN mesh protocols",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sabel83/mpllibs",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    28
                ]
            ]
        },
        "title": "C++ template metaprogramming library collection",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/weecology/METE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    11
                ]
            ]
        },
        "title": "Software for fitting and testing John Harte and colleagues' Maximum Entropy Theory of Ecology.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/commonsense/conceptnet5",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    21
                ]
            ]
        },
        "title": "Code for building ConceptNet from raw data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/weecology/white-etal-2012-ecology",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    12
                ]
            ]
        },
        "title": "Code for replicating \"Characterizing species-abundance distributions across taxa and ecosystems using a simple maximum entropy model\" by Ethan P. White, Katherine M. Thibault, and Xiao Xiao",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/szabyg/VIE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    6
                ]
            ]
        },
        "title": "RDFa - Backbone.js bridge",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bergie/create",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    1
                ]
            ]
        },
        "title": "Midgard Create, a generic web editing interface for any CMS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cjcliffe/CubicVR",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    3
                ]
            ]
        },
        "title": "CubicVR 3D Engine, C++ version",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jashkenas/coffee-script",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    18
                ]
            ]
        },
        "title": "Unfancy JavaScript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Khan/khan-exercises",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    9
                ]
            ]
        },
        "title": "A  framework for building exercises to work with Khan Academy.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vkaravir/JSAV",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    20
                ]
            ]
        },
        "title": "JavaScript Algorithm Visualization library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/metashare/META-SHARE",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    7
                ]
            ]
        },
        "title": "Public repository of the META-SHARE software",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/avin2/SensorKinect",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    8
                ]
            ]
        },
        "title": "PrimeSensor Modules for OpenNI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CarlosRodrigues/RestfulBenchmark",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    25
                ]
            ]
        },
        "title": "Android Application created for measuring XML and JSON parsing on restful webservices",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeresig/processing-js",
        "issued": {
            "date-parts": [
                [
                    2008,
                    5,
                    12
                ]
            ]
        },
        "title": "A port of the Processing visualization language to JavaScript.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mjsuhonos/mytpl",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    21
                ]
            ]
        },
        "title": "Location-aware Mobile Search using PHP-YAZ and IUI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tjhladish/EpiFire",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    25
                ]
            ]
        },
        "title": "A fast C++ API for simulating the spread of epidemics on contact networks.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/grierj/range",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    22
                ]
            ]
        },
        "title": "Hostname and cluster manipulation libraries.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/saltstack/salt",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    20
                ]
            ]
        },
        "title": "Central system and configuration manager ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/poldrack/openfmri",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    26
                ]
            ]
        },
        "title": "code related to the OpenFMRI project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jhclark/multeval",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    18
                ]
            ]
        },
        "title": "Easy Bootstrap Resampling and Approximate Randomization for BLEU, METEOR, and TER using Multiple Optimizer Runs. This implements \"Better Hypothesis Testing for Statistical Machine Translation: Controlling for Optimizer Instability\" from ACL 2011.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wf4ever/scufl2-wfdesc",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    18
                ]
            ]
        },
        "title": "Convert from Scufl2 to wfdesc from Wf4Ever RO ontology",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adaptivegenome/repeatseq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    22
                ]
            ]
        },
        "title": "Accurate microsatellite genotypes from high-throughput resequencing data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JeffreyRacine/R-Package-crs",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    23
                ]
            ]
        },
        "title": "R package crs (Categorical Regression Splines)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zhenkai/vkey",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    3
                ]
            ]
        },
        "title": "key verification code for NDN testbed ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nlathia/TriggerManager",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    8
                ]
            ]
        },
        "title": "Android library for sensor-based notifications",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/patvarilly/DNACC",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    30
                ]
            ]
        },
        "title": "Python module for calculating DNACC interaction potentials and binding details",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/facebook/scribe",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    2
                ]
            ]
        },
        "title": "Scribe is a server for aggregating log data streamed in real time from a large number of servers.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chandranorth/RTSPM",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    4
                ]
            ]
        },
        "title": "Real Time Scanning Probe Microscopy Interface",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openstack/nova",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    22
                ]
            ]
        },
        "title": "OpenStack Compute (Nova)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/joaks1/dpp-msbayes",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    14
                ]
            ]
        },
        "title": "A modification of the comparative phylogeographic method, msBayes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/olafur/mixim",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    28
                ]
            ]
        },
        "title": "A branch of mixim that supports dynamic creation/destruction of nodes, importing of external mobility traces and multiple controllable radios per mobile node.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/svrnm/parallelGBC",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    9
                ]
            ]
        },
        "title": "Parallel Groebner Basis Computation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/twitter/flockdb",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    12
                ]
            ]
        },
        "title": "A distributed, fault-tolerant graph database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Dinahmoe/tuna",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    7
                ]
            ]
        },
        "title": "An audio effects library for Web Audio, made by www.dinahmoe.com",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nrsalinas/2matrix",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    24
                ]
            ]
        },
        "title": "A utility for merging and translating phylogenetic datasets ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rdpeng/cachesweave",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    4
                ]
            ]
        },
        "title": "Tools for caching Sweave computations and storing them in key-value databases",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wspr/magcode",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    21
                ]
            ]
        },
        "title": "Calculating the forces between magnets and coils and multipole magnet arrays",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SachaEpskamp/semPlot",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    11
                ]
            ]
        },
        "title": "Path diagrams and visual analysis of various SEM packages' output",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/philchalmers/mirt",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    3
                ]
            ]
        },
        "title": "Multidimensional item response theory",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jaked/ocamljs",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    30
                ]
            ]
        },
        "title": "Javascript back-end for OCamlc",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nurv/BicaVM",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    10
                ]
            ]
        },
        "title": "Javascript implementation of JVM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lh3/bwa",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    14
                ]
            ]
        },
        "title": "Burrow-Wheeler Aligner",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mongodb/mongo-ruby-driver",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    15
                ]
            ]
        },
        "title": "Ruby driver for MongoDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mongodb/mongo-python-driver",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    15
                ]
            ]
        },
        "title": "PyMongo - the Python driver for MongoDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/erilllab/scnRCA",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    7
                ]
            ]
        },
        "title": "scnRCA: a self-consistent codon adaptation index with implicit normalization for mutational bias",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ISA-tools/graph2tab",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    31
                ]
            ]
        },
        "title": "This package is a generic implementation of a method for producing spreadsheets out of pipeline graphs. It is based on the computation of the minimum flow from all the sources to all the sink nodes, having set at 1 the lower bound for all the experimental workflow arcs (and no upper bound, i.e. capacity) restrictions.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/edumbill/doap",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    13
                ]
            ]
        },
        "title": "RDF schema for describing software projects",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/square/cube",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    12
                ]
            ]
        },
        "title": "Cube: A system for time series visualization.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nadaoneal/gapps_python_whatever",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    12
                ]
            ]
        },
        "title": "Random python scripts I use for our EDU \"Google Apps for Your Domain\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Ecogenomics/APP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    16
                ]
            ]
        },
        "title": "Ace Pyrotag Pipeline - wrapper for QIIME and R - interfaces with PyroDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JUrban/BliStr",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    5
                ]
            ]
        },
        "title": "BliStr system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ninjin/simsem",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    16
                ]
            ]
        },
        "title": "Semantic Category Disambiguation using SimString, large lexical resources and LibLinear",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jucovschi/etherpad-lite",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    22
                ]
            ]
        },
        "title": "An Etherpad based on node.js - Our goal is to make collaborative editing the standard on the web",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cory-ko/KBWS",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    29
                ]
            ]
        },
        "title": "Keio Bioinformatics Web Service (an EMBASSY package for accessing popular bioinformatics web services)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nhansen/Shimmer",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    2
                ]
            ]
        },
        "title": "Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/quicklizard99/cheddar",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    13
                ]
            ]
        },
        "title": "Analysis and visualisation of ecological communities in R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/elacin/PDFExtract",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    28
                ]
            ]
        },
        "title": "my take at a PDF text extraction utility",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/iPlantCollaborativeOpenSource/TNRS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    10
                ]
            ]
        },
        "title": "The Taxonomic Name Resolution Service is a free utility for correcting and standardizing plant names.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/seomoz/dragnet",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    20
                ]
            ]
        },
        "title": "Just the facts -- web page content extraction",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mn200/CFL-HOL",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    29
                ]
            ]
        },
        "title": "Theory of Context-Free Languages in HOL",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/riverlee/MitoSeek",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    6
                ]
            ]
        },
        "title": "Seeking information like heteroplasmy, structure variants, etc. on  Mitochondrial genome from next generation sequencing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jboulon/Honu",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    18
                ]
            ]
        },
        "title": "Honu is a large scale data collection and processing pipeline",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tinkerpop/gremlin",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    20
                ]
            ]
        },
        "title": "A Graph Traversal Language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alfredas/AgentSpring",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    17
                ]
            ]
        },
        "title": "Agent Based Modeling framework based on Spring and Neo4J",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/awysocki/C2DM-PhoneGap",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    3
                ]
            ]
        },
        "title": "PhoneGap plugin for Google C2DM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/edsu/pymarc",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    11
                ]
            ]
        },
        "title": "process MARC records from Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jermnelson/Discover-Aristotle",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    23
                ]
            ]
        },
        "title": "A Django-based bibliographic, repository, and access framework for building cataloging applications. Project documentation available at",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jorgegarcia/UnityOSC",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    30
                ]
            ]
        },
        "title": "Open Sound Control (OSC) C# classes interface for the Unity3d game engine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rincedd/largenet2",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    29
                ]
            ]
        },
        "title": "C++ library for large dynamic network simulation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shoaibkamil/asp",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    18
                ]
            ]
        },
        "title": "ASP: A SEJITS Implementation for Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tantalor/user-agent-entropy",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    23
                ]
            ]
        },
        "title": "A Chrome Extension that adds entropy to your User Agent headers. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dill/Distance",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    16
                ]
            ]
        },
        "title": "Simple distance sampling analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nevrenato/Hets_Fork",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    18
                ]
            ]
        },
        "title": "A new branch of Hets, where I extend it with new functionalities, in the context of my Thesis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/elhart/HelloWorld",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    24
                ]
            ]
        },
        "title": "pdnet usi display app template.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mpi2/PhenotypeArchive",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    21
                ]
            ]
        },
        "title": "EMBL-EBI Knockout mouse Phenotype archive database, pipelines and web application",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/scalien/keyspace",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    14
                ]
            ]
        },
        "title": "Keyspace is a consistently replicated, fault-tolerant key-value store.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/biocoder/SBEToolbox",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    6
                ]
            ]
        },
        "title": "SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tomayac/wikipedia-irc",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    5
                ]
            ]
        },
        "title": "Try to spot new trends based on Wikipedia live edit spikes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/spacocha/Distribution-based-clustering",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    27
                ]
            ]
        },
        "title": "Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) for ecological or biomedical research. This algorithm uses the information contained in the distribution of DNA sequences across samples along with sequence similarity to cluster sequences more accurately than other methods that are currently available. Developed for Illumina next-generation sequencing libraries, but applicable to any sequencing platform with sufficient number of counts per sample to infer distribution patterns.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aemoncannon/ensime",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    25
                ]
            ]
        },
        "title": "ENhanced Scala Interaction Mode for Emacs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CONNJUR/CONNJUR-Sandbox",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    16
                ]
            ]
        },
        "title": "The aim of CONNJUR-Sandbox is to exemplify the power of functional and dynamic languages applied to a broad range of data mining problems.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/scalatra/scalatra",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    31
                ]
            ]
        },
        "title": "Tiny Scala high-performance, async web framework, inspired by Sinatra",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jessealama/tptp4mizar",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    28
                ]
            ]
        },
        "title": "Theories in proofs, in TPTP and Mizar",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nathanhaigh/ngs_workshop",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    24
                ]
            ]
        },
        "title": "A Next Generation Sequencing (NGS) Workshop developed by Bioplatforms Australia (BPA), CSIRO Bioinformatics Core and the EBI.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Vayu/PJFry",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    28
                ]
            ]
        },
        "title": "PJFry - library for one-loop tensor integrals",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/idiap/bob",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    1
                ]
            ]
        },
        "title": "Bob is a free signal-processing and machine learning toolbox originally developed by the Biometrics group at Idiap Research Institute, in Switzerland.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/anthonyu/Sizzle",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    5
                ]
            ]
        },
        "title": "A compiler and runtime for Google's Sawzall language, optimized for Hadoop",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/2b-as/xgoldmon",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    24
                ]
            ]
        },
        "title": "Convert log messages by phones with XGold baseband processor back to GSM/UMTS radio messages",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pragma-/networklog",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    22
                ]
            ]
        },
        "title": "Android Network Log Monitor",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/antolikjan/Mozaik",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    6
                ]
            ]
        },
        "title": "High-level spiking model definition and workflow framework",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/semin/ulla",
        "issued": {
            "date-parts": [
                [
                    2008,
                    11,
                    7
                ]
            ]
        },
        "title": "A new ESST generator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jbeard4/SCION",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    8
                ]
            ]
        },
        "title": "StateCharts Interpretation and Optimization eNgine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rperezperez/modeler",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    27
                ]
            ]
        },
        "title": "Repositorio de Modelos",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/daviddoria/PoissonReconstruction",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    3
                ]
            ]
        },
        "title": "Poisson surface reconstruction implementation in VTK",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/markcerqueira/soundCraft",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    20
                ]
            ]
        },
        "title": "Framework for Transducing a StarCraft 2 Game",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JasperSnoek/spearmint",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    18
                ]
            ]
        },
        "title": "Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper:  Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams.  Advances in Neural Information Processing Systems, 2012 ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hyperopt/hyperopt",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    6
                ]
            ]
        },
        "title": "Distributed Asynchronous Hyperparameter Optimization in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cheng81/PEPL0",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    1
                ]
            ]
        },
        "title": "A Process-Oriented Event-Based Language, Javascript prototype",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rothlab/chromozoom",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    1
                ]
            ]
        },
        "title": "ChromoZoom is a fast, fluid web-based genome browser",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/danieljfarrell/pvtrace",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    5
                ]
            ]
        },
        "title": "Optical ray tracing for photovoltaic devices and luminescent materials",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NetherlandsMetabolomicsCentre/metitree",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    29
                ]
            ]
        },
        "title": "Metitree",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/glennhickey/hal",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    20
                ]
            ]
        },
        "title": "Hierarchical Alignment Format",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fhcrc/deenurp",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    19
                ]
            ]
        },
        "title": "De-novo selection of reference sequences",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fhcrc/taxtastic",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    21
                ]
            ]
        },
        "title": "Create and maintain phylogenetic \"reference packages\" of biological sequences.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/blaxterlab/blobology",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    30
                ]
            ]
        },
        "title": "Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mojones/Blobsplorer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    1
                ]
            ]
        },
        "title": "javascript tool for exploring taxonomically-annotated blob plots and selecting points",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/epigenomics/methylmaps",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    7
                ]
            ]
        },
        "title": "Data analysis pipeline for the Methyl-MAPS method",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/elibtronic/tabulatron",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    17
                ]
            ]
        },
        "title": "Arduino based Google Form poster",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/petewarden/pagerankgraph",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    13
                ]
            ]
        },
        "title": "Visualizes search engine ranking algorithms for a given domain",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/olleolleolle/wav2c",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    16
                ]
            ]
        },
        "title": "wav2c makes arrays out of sounds - useful for Arduino SMAPLER v2 (and for GameBoy Advance) etc",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/timrdf/csv2rdf4lod-automation",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    17
                ]
            ]
        },
        "title": "Shell script automation to support csv2rdf4lod converter",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/astrid/GenoViewer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    17
                ]
            ]
        },
        "title": "A genome browser for NGS data analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/meren/illumina-utils",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    25
                ]
            ]
        },
        "title": "A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/phillord/tawny-pizza",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    22
                ]
            ]
        },
        "title": "The Pizza Ontology in Tawny OWL",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MaZderMind/osm-history-splitter",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    28
                ]
            ]
        },
        "title": "A Tool used to split Full-History-Planet-Dumps into smaller extracts based on Bounding-Boxes or Polygons.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/agesmundo/HadoopPerceptron",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    31
                ]
            ]
        },
        "title": " http://static.googleusercontent.com/external_content/untrusted_dlcp/research.google.com/en//pubs/archive/36266.pdf",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ibm-bioinformatics/bluesnp",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    17
                ]
            ]
        },
        "title": "BlueSNP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jotegui/BIDDSAT",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    2
                ]
            ]
        },
        "title": "BIDDSAT: BIoDiversity DataSet Assessment Tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simsong/bulk_extractor",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    3
                ]
            ]
        },
        "title": "This is the development tree. For downloads please see:",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simsong/be13_api",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    30
                ]
            ]
        },
        "title": "API for bulk_extractor version 1.3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/markhuberty/twitter_election2012",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    21
                ]
            ]
        },
        "title": "Repository for the predicton algorithms, code, and data for real-time prediction of the 2012 Congressional elections",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ksanao/TGNet",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    15
                ]
            ]
        },
        "title": "Transcript to Genome Consistency Network",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/twalsworth/customSpriteControl",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    10
                ]
            ]
        },
        "title": "flex 3 and a flex 4 custom component",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cmmt/chromatra",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    29
                ]
            ]
        },
        "title": "Chromatra plugin for the Galaxy bioinformatics platform",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/iontorrent/TMAP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    13
                ]
            ]
        },
        "title": "Torrent Mapping Alignment Program",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SimTk/msmexplorer",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    27
                ]
            ]
        },
        "title": "MSMExplorer is a visualization system for markov state models for protein folding networks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/patilkr/userCSP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    25
                ]
            ]
        },
        "title": "User Specified Content Security Policy Add-on",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kevinweil/hadoop-lzo",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    20
                ]
            ]
        },
        "title": "Patched, refactored version of code.google.com/hadoop-gpl-compression for hadoop 0.20",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kevinweil/elephant-bird",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    25
                ]
            ]
        },
        "title": "Twitter's collection of LZO and Protocol Buffer-related Hadoop, Pig, Hive, and HBase code.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hannesm/Kopitiam",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    25
                ]
            ]
        },
        "title": "eclipse plugin to support side-by-side proofs and code",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kripken/emscripten",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    12
                ]
            ]
        },
        "title": "Emscripten: An LLVM-to-JavaScript Compiler",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/whymirror/hoodwinkd",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    19
                ]
            ]
        },
        "title": "the travelling peanut gallery (a meta-web)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jj1bdx/sfmt-erlang",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    4
                ]
            ]
        },
        "title": "sfmt-erlang: SIMD-oriented Fast Mersenne Twister (SFMT) for Erlang",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/maniacbug/contiki-avr-zigduino",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    25
                ]
            ]
        },
        "title": "Zigduino platform for Contiki OS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pridkett/gitminer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    18
                ]
            ]
        },
        "title": "Java based tools for extracting information from GitHub and git repositories into a graph database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PrimeSense/Sensor",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    8
                ]
            ]
        },
        "title": "PrimeSensor Modules for OpenNI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hadley/productplots",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    26
                ]
            ]
        },
        "title": "Product graphics for categorical data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/canbal/Tally",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    13
                ]
            ]
        },
        "title": "A web-based data collection tool for subjective video experiments",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andreabedini/tutte",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    18
                ]
            ]
        },
        "title": "computes the Tutte Polynomial",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lostonroute66/pillbox",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    12
                ]
            ]
        },
        "title": "Pillbox at the National Library of Medicine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sitaramc/gitolite",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    24
                ]
            ]
        },
        "title": "Hosting git repositories -- Gitolite allows you to setup git hosting on a central server, with very fine-grained access control and many (many!) more powerful features.  [IMPORTANT: please click and read the WIKI link above before submitting issues, pull requests, etc]",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/overtone/overtone",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    23
                ]
            ]
        },
        "title": "Collaborative Programmable Music ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/samaaron/monomer",
        "issued": {
            "date-parts": [
                [
                    2008,
                    6,
                    16
                ]
            ]
        },
        "title": "A Ruby library (and sample apps) for playing with a monome (http://monome.org)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gxa/gxa",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    1
                ]
            ]
        },
        "title": "Gene Expression Atlas",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/IGS/disease-ontology",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    4
                ]
            ]
        },
        "title": "Tools and source for the Disease Ontology browser web app.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/myleott/twitter-corpus-tools",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    29
                ]
            ]
        },
        "title": "twitter-corpus-tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aseldawy/spatialhadoop",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    13
                ]
            ]
        },
        "title": "Mirror of Apache Hadoop common",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lupeke/python-firmata",
        "issued": {
            "date-parts": [
                [
                    2008,
                    11,
                    7
                ]
            ]
        },
        "title": "Python bindings for the Firmata protocol",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rocky/kshdb",
        "issued": {
            "date-parts": [
                [
                    2008,
                    8,
                    11
                ]
            ]
        },
        "title": "Korn Shell (93t 2008-10-22 or greater) Debugger",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/parahunter/Space-Bugz",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    27
                ]
            ]
        },
        "title": "One of the world's first smartphone controlled crowd games",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/raimohanska/reactive-bacon",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    12
                ]
            ]
        },
        "title": "FRP (functional reactive programming) framework inspired by RX and Iteratee",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nathanmarz/storm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    17
                ]
            ]
        },
        "title": "Distributed and fault-tolerant realtime computation: stream processing, continuous computation, distributed RPC, and more",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kriszyp/json-schema",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    29
                ]
            ]
        },
        "title": "JSON Schema specifications, reference schemas, and a CommonJS implementation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AKSW/BioASQ-AT",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    15
                ]
            ]
        },
        "title": "Annotation tool for the BioASQ project.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AKSW/SPARQL2NL",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    11
                ]
            ]
        },
        "title": "converts SPARQL queries to natural language expressions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jdarcy/glupy",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    11
                ]
            ]
        },
        "title": "GlusterFS translators in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jdarcy/negative-lookup",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    15
                ]
            ]
        },
        "title": "A GlusterFS translator to cache failed lookups",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nii-cloud/dodai-deploy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    1
                ]
            ]
        },
        "title": "Deployment Tool for OpenStack(Nova, Glance and Swift) and Hadoop using Puppet",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Bitcoin/Bitcoin",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    19
                ]
            ]
        },
        "title": "Bitcoin Core integration/staging tree",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jtleek/swfdr",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    7
                ]
            ]
        },
        "title": "R code for calculating the Science-wise False Discovery Rate",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cjlee112/darwin",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    23
                ]
            ]
        },
        "title": "prototyping environment for statistical inference",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/spree/spree",
        "issued": {
            "date-parts": [
                [
                    2008,
                    3,
                    10
                ]
            ]
        },
        "title": "Spree is a complete open source e-commerce solution for Ruby on Rails.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/timd/Pro-iOS-TableViews",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    3
                ]
            ]
        },
        "title": "Code for Pro iOS TableViews book",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rpavlik/wiiuse",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    27
                ]
            ]
        },
        "title": "(Semi-Official Fork of) WiiUse Wii Remote access library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Flotype/now",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    2
                ]
            ]
        },
        "title": "NowJS makes it easy to build real-time web apps using JavaScript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rjmarsan/Weka-for-Android",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    16
                ]
            ]
        },
        "title": "the Weka project with the GUI components removed so it works with Android",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zseder/webcorpus",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    6
                ]
            ]
        },
        "title": "webcorpus pipeline",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simon-weber/Programming-Language-Identification",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    9
                ]
            ]
        },
        "title": "Accompanying code for the arXiv paper first published in June of 2011",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CloPeMa/garment_dataset",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    9
                ]
            ]
        },
        "title": "Matlab tools for CloPeMa Garment Dataset:",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tk2/RetroSeq",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    13
                ]
            ]
        },
        "title": "RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/behas/lucene-skos",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    22
                ]
            ]
        },
        "title": "SKOS Support for Apache Lucene and Solr",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/porduna/weblabdeusto",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    7
                ]
            ]
        },
        "title": "Scalable, web-based and experiment-agnostic remote laboratory management system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/msama/django-jom",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    18
                ]
            ]
        },
        "title": "Django Javascript object model. Extracts javascript objects from Django models.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/INCF/BrainImagingPipelines",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    22
                ]
            ]
        },
        "title": "BIPs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/martynsmith/node-irc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    14
                ]
            ]
        },
        "title": "NodeJS IRC client library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hupili/snsapi",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    3
                ]
            ]
        },
        "title": "Cross platform middleware for Social Networking Services: Twitter, Facebook, SinaWeibo, Renren, RSS, Email, Sqlite, ... (more coming)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hupili/sns-router",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    27
                ]
            ]
        },
        "title": "Intelligent Cross Domain SNS Router",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/optimusmoose/statistical_agglomeration",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    17
                ]
            ]
        },
        "title": "Tool for summarizing a direct-infusion lipidomics mass spec data into one spectrum.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SanabriaRusso/USRP-GNURadio",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    4
                ]
            ]
        },
        "title": "Code involving USRP-E110 and GNURadio",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/socialsoftware/blended-workflow",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    10
                ]
            ]
        },
        "title": "A blended workflow engine on top of YAWL",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/askerlee/namedis",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    26
                ]
            ]
        },
        "title": "An Author Name Disambiguation system, using a Novel Categorical Similarity Measure and Wikipedia Taxonomy",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ged-lab/khmer",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    15
                ]
            ]
        },
        "title": "in-memory k-mer counting",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AKSW/cubeviz",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    10
                ]
            ]
        },
        "title": "Deployment repository of CubeViz",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fabric/fabric",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    1
                ]
            ]
        },
        "title": "Simple, Pythonic remote execution and deployment.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simonmd/couchdicom",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    24
                ]
            ]
        },
        "title": "DICOM object loader to CouchDB using Ruby DICOM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/oroulet/vc2hms",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    12
                ]
            ]
        },
        "title": "Export objects and signals in Visual Components simulation software to IceHMS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/princelab/metriculator",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    21
                ]
            ]
        },
        "title": "Performance metric tool for LCMS and MS experiments.  ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kholia/passe-partout",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    29
                ]
            ]
        },
        "title": "passe-partout is a tool to extract SSL private keys from process memory written by Nicolas Collignon and Jean-Baptiste Aviat (passe-partout@hsc.fr). ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/christophergandrud/InterpretingHazRatios",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    30
                ]
            ]
        },
        "title": "Project on interpreting hazard ratios in policy diffusion research.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tpoisot/ms_qr",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    11
                ]
            ]
        },
        "title": "Revisions of the MS on realized network modularity",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/senchalabs/connect",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    26
                ]
            ]
        },
        "title": "Connect is a middleware layer for Node.js",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/opentox/algorithm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    9
                ]
            ]
        },
        "title": "Algorithm webservice for OpenTox",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/basp-group/purify",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    16
                ]
            ]
        },
        "title": "PURIFY: next-generation radio interferometric imaging.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/twall/jna",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    29
                ]
            ]
        },
        "title": "Java Native Access",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/karlstolley/webappdev",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    2
                ]
            ]
        },
        "title": "Original stab at my Web Application Development course. New and future versions at URL below.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jrvalverde/MGtools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    8
                ]
            ]
        },
        "title": "Metagenomics tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/excemplify/immunoblot",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    25
                ]
            ]
        },
        "title": "immunoblot",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/filamentgroup/Responsive-Images",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    13
                ]
            ]
        },
        "title": "NOTE: use Picturefill instead. An Experiment with Mobile-First Images that Scale Responsively & Responsibly",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pelinakan/UBD",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    15
                ]
            ]
        },
        "title": "FinalVersions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NewEraCracker/LOIC",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    29
                ]
            ]
        },
        "title": "Low Orbit Ion Cannon - An open source network stress tool for Windows. Based on loic project at sourceforge.net/projects/loic/ and writen in C#. USE ON YOUR OWN RISK. WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kcontext/knowself",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    31
                ]
            ]
        },
        "title": "Activitiy logging; Supports time managmenet - Visualises time use, and resources used.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SMC-INESC/drumtranscription_pd",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    29
                ]
            ]
        },
        "title": "A streaming drum transcription system for Pure Data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/twitter/jvmgcprof",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    24
                ]
            ]
        },
        "title": "A simple utility for profile allocation and garbage collection activity in the JVM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rails/rails",
        "issued": {
            "date-parts": [
                [
                    2008,
                    4,
                    11
                ]
            ]
        },
        "title": "Ruby on Rails",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Thinkscape/zf2",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    16
                ]
            ]
        },
        "title": "Clone of Zend Framework 2 repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dougbarth/ermarb",
        "issued": {
            "date-parts": [
                [
                    2008,
                    6,
                    26
                ]
            ]
        },
        "title": "The Ruby port of the Extremely Reusable Monitoring API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/php/php-src",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    16
                ]
            ]
        },
        "title": "The PHP Interpreter",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bitcoin/bitcoin",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    19
                ]
            ]
        },
        "title": "Bitcoin Core integration/staging tree",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bendudson/BOUT",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    15
                ]
            ]
        },
        "title": "Plasma fluid finite-difference simulation code in curvilinear coordinate systems",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/genome/somatic-sniper",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    30
                ]
            ]
        },
        "title": "A tool to call somatic single nucleotide variants.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/minillinim/GroopM",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    7
                ]
            ]
        },
        "title": "Metagenomic binning suite",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ucdavis-bioinformatics/sickle",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    9
                ]
            ]
        },
        "title": "Windowed Adaptive Trimming for fastq files using quality",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matthiasbock/BooleSim",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    30
                ]
            ]
        },
        "title": "Systems biology tool: Boolean network simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/broadgsa/gatk",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    28
                ]
            ]
        },
        "title": "GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mlandis/phylowood",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    2
                ]
            ]
        },
        "title": "Browser-based Interactive Phylogeographic Animations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adamewing/bamsurgeon",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    10
                ]
            ]
        },
        "title": "tools for adding mutations to existing .bam files, used for testing mutation callers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/asayler/cu-cs-apt-packages",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    23
                ]
            ]
        },
        "title": "APT Packages for University of Colorado CS Courses",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/czarrar/cwas-paper",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    5
                ]
            ]
        },
        "title": "Scripts to analyze data and generate figures for the CWAS paper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hbc/projects",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    3
                ]
            ]
        },
        "title": "In-progress projects at Harvard School of Public Health Bioinformaitcs Core",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JoseBlanca/seq_crumbs",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    4
                ]
            ]
        },
        "title": "Little sequence file utilities meant to work within Unix pipelines",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/labra/haws",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    16
                ]
            ]
        },
        "title": "Haskell Web Semantics Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/samtools/samtools",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    9
                ]
            ]
        },
        "title": "This is the official development repository for samtools.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brentp/bwa-meth",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    2
                ]
            ]
        },
        "title": "align BS-Seq reads and tabulate methylation without intermediate temp files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arademaker/openWordnet-PT",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    6
                ]
            ]
        },
        "title": "OpenWordnet-PT: an open Brazilian Wordnet",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bbcf/bbcfutils",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    13
                ]
            ]
        },
        "title": "Collection of stand-alone tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bbcf/bbcflib",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    4
                ]
            ]
        },
        "title": "Internal utility modules for the BBCF",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jleinonen/pytmatrix",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    8
                ]
            ]
        },
        "title": "Python code for T-matrix scattering calculations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aubombarely/GenoToolBox",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    30
                ]
            ]
        },
        "title": "A box of genomics tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wwood/bioruby-kmer_counter",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    7
                ]
            ]
        },
        "title": "A biogem for counting small kmers for fingerprinting nucleotide sequences",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RcppCore/RcppArmadillo",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    2
                ]
            ]
        },
        "title": "Rcpp integration for Armadillo templated linear algebra library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/faylang/fay",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    21
                ]
            ]
        },
        "title": "A proper subset of Haskell that compiles to JavaScript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JohnLangford/vowpal_wabbit",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    31
                ]
            ]
        },
        "title": "John Langford's original release of Vowpal Wabbit -- a fast online learning algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/asascience-open/ncSOS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    31
                ]
            ]
        },
        "title": "SOS Service on top of THREDDS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SCRFpublic/dispat",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    24
                ]
            ]
        },
        "title": "MATLAB codes for DisPat",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mangal-wg/mangal-schemes",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    24
                ]
            ]
        },
        "title": "JSON schemes for the mangal project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mangal-wg/pymangal",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    18
                ]
            ]
        },
        "title": "Python module for the mangal API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/myourshaw/vax",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    20
                ]
            ]
        },
        "title": "Ensembl Variant Effect Predictor eXtras",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/christophergandrud/simPH",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    6
                ]
            ]
        },
        "title": "Tools for simulating and graphing results from proportional hazards survival models.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JohanZackrisson/visir_html5",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    23
                ]
            ]
        },
        "title": "Virtual instruments in reality ported to html5",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/orionzhou/SPADA",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    31
                ]
            ]
        },
        "title": "Small Peptide Alignment Detection Application",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/averaart/fq_delta",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    11
                ]
            ]
        },
        "title": "Efficient storage of processed versions of fastq files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/akiomiyao/tif",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    27
                ]
            ]
        },
        "title": "Transposon Insertion Finder",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/srobb1/RelocaTE",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    18
                ]
            ]
        },
        "title": "Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jheatmap/jheatmap",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    15
                ]
            ]
        },
        "title": "Javascript Heatmap viewer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ensembl-variation/VEP_plugins",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    21
                ]
            ]
        },
        "title": "Plugins for the Ensembl Variant Effect Predictor (VEP)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/javigzz/rAvis",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    4
                ]
            ]
        },
        "title": "rAvis: an R-package to download the information stored in “proyectoavis”, a citizen science bird project. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alyssafrazee/derfinder",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    6
                ]
            ]
        },
        "title": "R package for DER Finder, a method for differential expression analysis of RNA-seq data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cpsievert/pitchRx",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    6
                ]
            ]
        },
        "title": "Tools for Scraping XML Data and Visualizing Major League Baseball",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openptv/openptv",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    3
                ]
            ]
        },
        "title": "This is our central repository, holding only the community approved code and documentation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/leeper/UNF",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    3
                ]
            ]
        },
        "title": "Tools for creating universal numeric fingerprints for data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openptv/openptv-python",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    26
                ]
            ]
        },
        "title": "Python GUI for the OpenPTV",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lh3/seqtk",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    23
                ]
            ]
        },
        "title": "Toolkit for processing sequences in FASTA/Q formats",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adrlar/CanSNPer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    16
                ]
            ]
        },
        "title": "A hierarchical genotype classifier of clonal pathogens",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jamesmalone/AtlasRDF-R",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    9
                ]
            ]
        },
        "title": "R package for exploring and analysing with the Gene Expression Atlas RDF",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ekg/mutatrix",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    21
                ]
            ]
        },
        "title": "genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DEAP/notebooks",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    12
                ]
            ]
        },
        "title": "Notebooks on how to use Distributed Evolutionary Algorithm in Python (DEAP)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/grunwaldlab/poppr",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    19
                ]
            ]
        },
        "title": "An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nh13/DWGSIM",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    19
                ]
            ]
        },
        "title": "Whole Genome Simulator for Next-Generation Sequencing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ekg/vcflib",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    22
                ]
            ]
        },
        "title": "a simple C++ library for parsing and manipulating VCF files, + many command-line utilities",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/katholt/srst2",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    25
                ]
            ]
        },
        "title": "Short Read Sequence Typing for Bacterial Pathogens",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/uci-cbcl/EXTREME",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    4
                ]
            ]
        },
        "title": "An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cstubben/pmcXML",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    8
                ]
            ]
        },
        "title": "Tools for searching and parsing full text XML articles and tables in Pubmed Central",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CGATOxford/cgat",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    29
                ]
            ]
        },
        "title": "CGAT - Computational Genomics Analysis Tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/naturalis/HTS-barcode-checker",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    15
                ]
            ]
        },
        "title": "Pipeline for BLAST analysis of Hight-throughput sequencing data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mars0i/popco",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    21
                ]
            ]
        },
        "title": "Cultural transmission with analogy biases",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DavidBrainard/RenderToolbox3",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    10
                ]
            ]
        },
        "title": "Matlab toolbox for managing graphics rendering for psychophysics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kif/sift_pyocl",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    28
                ]
            ]
        },
        "title": "An implementation of SIFT on GPU with OpenCL",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/charite/jannovar",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    7
                ]
            ]
        },
        "title": "Java framework for annotating VCF files with gene/transcript-based annotations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/yibinlin/inflood_generator",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    14
                ]
            ]
        },
        "title": "Inflood Generator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/h5bp/html5-boilerplate",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    24
                ]
            ]
        },
        "title": "A professional front-end template for building fast, robust, and adaptable web apps or sites.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ytai/ioio",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    26
                ]
            ]
        },
        "title": "Software, firmware and hardware of the IOIO - I/O for Android",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Eitan177/targetSeqView",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    29
                ]
            ]
        },
        "title": "Visualize next generation sequencing reads over putative structural variants",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gedankenstuecke/snpr",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    7
                ]
            ]
        },
        "title": "The sources of the openSNP website",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/oneclick/rubyinstaller",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    15
                ]
            ]
        },
        "title": "RubyInstaller for Windows - Build recipes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shokai/arduino_firmata",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    23
                ]
            ]
        },
        "title": "Arduino Firmata protocol implementation on Ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sgibb/MALDIquantForeign",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    8
                ]
            ]
        },
        "title": "Import/Export routines for MALDIquant",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tesserae/tesserae",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    23
                ]
            ]
        },
        "title": "The Tesserae project aims to provide a flexible and robust web interface for exploring intertextual parallels. Select two poems below to see a list of lines sharing two or more words (regardless of inflectional changes).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/peterexner/KOSHIK",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    2
                ]
            ]
        },
        "title": "An NLP framework for large scale processing using Hadoop",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sylvainforet/libngs",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    23
                ]
            ]
        },
        "title": "The Nifty GNU Sequence Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andikleen/tsx-tools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    16
                ]
            ]
        },
        "title": "Header files for Intel TSX (Transactional Synchronization Extension) development",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/troglobit/pimd",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    16
                ]
            ]
        },
        "title": "This is the original USC pimd, revived at github to serve as  a central point of collaboration for all in need of a small and efficient PIM-SM implementation.  Thanks to OpenBSD pimd is now free software under the 3-clause BSD license!",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/HoTT/HoTT",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    26
                ]
            ]
        },
        "title": "Homotopy type theory",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rochoa85/myChEMBL",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    10
                ]
            ]
        },
        "title": "myChEMBL Interface",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jgmeyerucsd/ProteomeDigestSim",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    1
                ]
            ]
        },
        "title": "A collection of R classes to allow prediction of proteome coverage based on digestion, specifically iterative digestion by MED-FASP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/garvitlnmiit/SNAPSync",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    22
                ]
            ]
        },
        "title": "Linux software to do live syncing between local and remote system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Modernizr/Modernizr",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    25
                ]
            ]
        },
        "title": "Modernizr is a JavaScript library that detects HTML5 and CSS3 features in the user’s browser.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rickynils/scalacheck",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    26
                ]
            ]
        },
        "title": "Property-based testing for Scala",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/stnava/ANTs",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    23
                ]
            ]
        },
        "title": "Advanced Normalization Tools (ANTs)  ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/katrakolsek/DoTS",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    27
                ]
            ]
        },
        "title": "Docking interface for Target Systems (program for docking one molecule to multiple targets)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jacobhurst/definetherain",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    29
                ]
            ]
        },
        "title": "Clustering for digital droplet data. A javascript program that allows user to cluster digital droplet PCR data to define cut offs and improve calling",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/christophergandrud/dynsim",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    4
                ]
            ]
        },
        "title": "An R implementation of dynamic simulations of autoregressive relationships",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kkeenan02/diveRsity-dev",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    25
                ]
            ]
        },
        "title": "This repository contains the diveRsity package during major code updates",
        "type": "dataset"
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    {
        "URL": "https://github.com/agoldst/dfr-analysis",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    12
                ]
            ]
        },
        "title": "Scripts to help work on data from JSTOR's Data for Research service",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/petrossou/uquantchem",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    19
                ]
            ]
        },
        "title": "A versatile and easy to use Quantum Chemistry Computational Software",
        "type": "dataset"
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    {
        "URL": "https://github.com/sieben/makesense",
        "issued": {
            "date-parts": [
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                    2013,
                    8,
                    6
                ]
            ]
        },
        "title": "Managing Reproducible WSNs Experiments",
        "type": "dataset"
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    {
        "URL": "https://github.com/lmrodriguezr/nonpareil",
        "issued": {
            "date-parts": [
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                    2012,
                    7,
                    18
                ]
            ]
        },
        "title": "Estimate average coverage and generate Nonpareil curves.",
        "type": "dataset"
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    {
        "URL": "https://github.com/MPBA/nettools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    23
                ]
            ]
        },
        "title": "R package for network analysis",
        "type": "dataset"
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    {
        "URL": "https://github.com/johnros/prevalenve_simulation",
        "issued": {
            "date-parts": [
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                    2013,
                    5,
                    28
                ]
            ]
        },
        "title": "Simulation code accompanying manuscript",
        "type": "dataset"
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    {
        "URL": "https://github.com/lisa-dou/VerifySD",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    8
                ]
            ]
        },
        "title": "Verification of UML Sequence Diagrams in Coq",
        "type": "dataset"
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    {
        "URL": "https://github.com/lbf-ijs/DiffusiveDynamics",
        "issued": {
            "date-parts": [
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                    2013,
                    9,
                    23
                ]
            ]
        },
        "title": "Calculate position-dependent diffusion coefficients in one and two dimensions from collective variables trajectories. ",
        "type": "dataset"
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    {
        "URL": "https://github.com/samyk/skyjack",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    3
                ]
            ]
        },
        "title": "skyjack takes over Parrot drones, deauthenticating their true owner and taking over control, turning them into zombie drones under your own control",
        "type": "dataset"
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    {
        "URL": "https://github.com/felixge/node-cross-compiler",
        "issued": {
            "date-parts": [
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                    2012,
                    10,
                    9
                ]
            ]
        },
        "title": "Simplified cross compiling for node.js using vagrant.",
        "type": "dataset"
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    {
        "URL": "https://github.com/mkorpar/swSharp",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    16
                ]
            ]
        },
        "title": "CUDA parallelized version of Smith-Waterman algorithm (development version)",
        "type": "dataset"
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    {
        "URL": "https://github.com/shasso/LibrarySystemJSEA2014",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    30
                ]
            ]
        },
        "title": "case study showing design patterns as integrators",
        "type": "dataset"
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    {
        "URL": "https://github.com/ngds/ckanext-ngds",
        "issued": {
            "date-parts": [
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                    2013,
                    1,
                    15
                ]
            ]
        },
        "title": "CKAN extension for NGDS-specific customizations",
        "type": "dataset"
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    {
        "URL": "https://github.com/esa/pykep",
        "issued": {
            "date-parts": [
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                    2013,
                    3,
                    12
                ]
            ]
        },
        "title": "Mirroring the sourceforge repository: C++ toolbox and Python bindings for basic astrodynamics scientific computations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NanoCAN/OpenLabFramework",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    11
                ]
            ]
        },
        "title": "A open source framework for research data management",
        "type": "dataset"
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    {
        "URL": "https://github.com/berndbischl/parallelMap",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    13
                ]
            ]
        },
        "title": "R package to interface some popular parallelization back-ends with a unified interface",
        "type": "dataset"
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    {
        "URL": "https://github.com/gurcani/zpdgen",
        "issued": {
            "date-parts": [
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                    2013,
                    10,
                    12
                ]
            ]
        },
        "title": "A generalized plasma dispersion function formulation of Inm's.",
        "type": "dataset"
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    {
        "URL": "https://github.com/basp-group/co-oi",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    28
                ]
            ]
        },
        "title": "Matlab code implementing the tensor-based optimization algorithms for optical-interferometric imaging",
        "type": "dataset"
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    {
        "URL": "https://github.com/michada/GeneCommittee",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    7
                ]
            ]
        },
        "title": "Knowledge-based diagnostic web-tool for microarray and RNA-seq data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/princelab/mspire",
        "issued": {
            "date-parts": [
                [
                    2008,
                    8,
                    21
                ]
            ]
        },
        "title": "mass  spectrometry proteomics in ruby",
        "type": "dataset"
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    {
        "URL": "https://github.com/jamescummings/conluvies",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    24
                ]
            ]
        },
        "title": "collection of impurities , filth; washings, offscourings, dregs; i.e. miscellaneous crap.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/FedericoV/conference_pairings",
        "issued": {
            "date-parts": [
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                    2013,
                    12,
                    17
                ]
            ]
        },
        "title": "Code used to implement the matchmaking procedure described in Vaggi et al, 2014.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fcchou/HelixMC",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    18
                ]
            ]
        },
        "title": "Python-based Monte Carlo simulator for DNA/RNA duplexes.",
        "type": "dataset"
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    {
        "URL": "https://github.com/Data2Semantics/PatViz",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    18
                ]
            ]
        },
        "title": "Patent collaboration network visualizer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/smathot/materials_for_P0001",
        "issued": {
            "date-parts": [
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                    2014,
                    2,
                    5
                ]
            ]
        },
        "title": "Participant data, analysis scripts, experimental script, and manuscript source for P0001",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/genome/breakdancer",
        "issued": {
            "date-parts": [
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                    2010,
                    9,
                    12
                ]
            ]
        },
        "title": "SV detection from paired end reads mapping",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dmcglinn/tgp_management",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    13
                ]
            ]
        },
        "title": "Data and scripts for investigating the relative importance of fire and grazing relative to soil and climate variables at the Tallgrass Prairie Preserve.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/contiki-os/contiki",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    24
                ]
            ]
        },
        "title": "The official git repository for Contiki, the open source OS for the Internet of Things",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Sable/mclab",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    5
                ]
            ]
        },
        "title": "Compiler toolkit for MATLAB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/robjhyndman/hts",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    22
                ]
            ]
        },
        "title": "hts package for R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/solgenomics/sgn-home",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    26
                ]
            ]
        },
        "title": "per-developer versioned home directories for miscellaneous work",
        "type": "dataset"
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    {
        "URL": "https://github.com/Gregmayo/MetaboX-Library",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    8
                ]
            ]
        },
        "title": "A PHP library to build metabolic networks from KEGG database.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JervenBolleman/sparql-bed",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    15
                ]
            ]
        },
        "title": "sparql against simple bed files without loading them into a triple store.",
        "type": "dataset"
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    {
        "URL": "https://github.com/tjpalmer/keepaway",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    19
                ]
            ]
        },
        "title": "RoboCup Keepaway benchmark player framework.",
        "type": "dataset"
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    {
        "URL": "https://github.com/dill/msg",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    15
                ]
            ]
        },
        "title": "Multidimensional Scaling for Generalized additive models. See wiki for examples.",
        "type": "dataset"
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    {
        "URL": "https://github.com/percyliang/brown-cluster",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    24
                ]
            ]
        },
        "title": "C++ implementation of the Brown word clustering algorithm.",
        "type": "dataset"
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    {
        "URL": "https://github.com/fpeder/XKin",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    21
                ]
            ]
        },
        "title": "eXtanble hand pose and gesture recognition library for Kinect",
        "type": "dataset"
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    {
        "URL": "https://github.com/mcieslik-mctp/epicode",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    13
                ]
            ]
        },
        "title": "Epicode discovers \"epigenetic codes\" ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RAPD/RAPD",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    19
                ]
            ]
        },
        "title": "Rapid Automated Processing of X-ray Data",
        "type": "dataset"
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    {
        "URL": "https://github.com/taoliu/MACS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    2
                ]
            ]
        },
        "title": "MACS -- Model-based Analysis of ChIP-Seq",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/KellyBlack/ODE-Recitation-Activities",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    20
                ]
            ]
        },
        "title": "Activities for the recitations for a large lecture class in ordinary differential equations.",
        "type": "dataset"
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    {
        "URL": "https://github.com/cbuhay/ExCID",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    22
                ]
            ]
        },
        "title": "The Exome Coverage and Identification Report displays the coverage of every target region in your capture design.  It also displays regions below an adjustable coverage threshold.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SCRFpublic/SGEMS-UQ",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    18
                ]
            ]
        },
        "title": "SGEMS-UQ code and data sets",
        "type": "dataset"
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    {
        "URL": "https://github.com/gxa/atlas",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    15
                ]
            ]
        },
        "title": "Expression Atlas",
        "type": "dataset"
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    {
        "URL": "https://github.com/flaviovdf/yourank",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    5
                ]
            ]
        },
        "title": "Simple web application for user evaluation of Youtube videos",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/YeoLab/clipper",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    7
                ]
            ]
        },
        "title": "A tool to identify CLIP-seq peaks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/EOL/pseudonitzchia",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    2
                ]
            ]
        },
        "title": "Biodiversity informatics code relevant to the Encyclopedia of Life",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shaih/HElib",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    5
                ]
            ]
        },
        "title": "An Implementation of homomorphic encryption",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/slra/slra",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    6
                ]
            ]
        },
        "title": "Software package for Hankel structured low-rank approximation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/uvainio/Beamline-B1-macros",
        "issued": {
            "date-parts": [
                [
                    2009,
                    6,
                    3
                ]
            ]
        },
        "title": "Data processing of 2d data to 1d data in absolute units with Matlab macros on beamline B1 at HASYLAB, Hamburg",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/neubot/neuviz",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    20
                ]
            ]
        },
        "title": "Neubot visualizer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AKSW/LODStats",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    31
                ]
            ]
        },
        "title": "statement-stream based RDF statistics generator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/plataformatec/devise",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    16
                ]
            ]
        },
        "title": "Flexible authentication solution for Rails with Warden.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/indirect/haml-rails",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    13
                ]
            ]
        },
        "title": "let your Gemfile do the talking",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/codelion/pathgrind",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    8
                ]
            ]
        },
        "title": "Path based Dynamic Analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lsaravia/mfsba",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    9
                ]
            ]
        },
        "title": "Multifractal estimation using a standard box counting algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/EESI/FizzyQIIME",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    21
                ]
            ]
        },
        "title": "QIIME build with information theoretic feature selection functionality. Note this project include the official build of QIIME (www.qiime.org) with the Fizzy feature selection module for metagenomic feature selection.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/redpony/cdec",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    3
                ]
            ]
        },
        "title": "Decoder, aligner, and model optimizer for statistical machine translation and other structured prediction models based on (mostly) context-free formalisms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/agrueneberg/Bounce",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    12
                ]
            ]
        },
        "title": "RESTful governance layer for MongoDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/semteacher/moodle",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    6
                ]
            ]
        },
        "title": "A direct mirror of the official moodle.git repository at http://git.moodle.org/.   Please do NOT file PULL requests here, instead please use http://tracker.moodle.org",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/eyewriter/eyewriter",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    24
                ]
            ]
        },
        "title": "open source eye tracking and drawing toolkit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bpat1434/redmine_category_tree",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    26
                ]
            ]
        },
        "title": "Module for Redmine to allow categories to be a tree instead of a single-list",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hdgarrood/redmine_release_notes",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    12
                ]
            ]
        },
        "title": "A plugin to add release notes to Redmine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mytardis/mytardis",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    22
                ]
            ]
        },
        "title": "MyTardis - a data management system for private lab/facility data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pepijnkokke/AutoInAgda",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    29
                ]
            ]
        },
        "title": "An implementation of a first-order auto tactic for Agda, in Agda.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/secgroup/Mignis",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    12
                ]
            ]
        },
        "title": "Mignis is a semantic based tool for firewall configuration.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gousiosg/github-mirror",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    26
                ]
            ]
        },
        "title": "Scripts to mirror Github in a cloudy fashion",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/godfreynolan/ToDoList",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    23
                ]
            ]
        },
        "title": "ToDoList",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/avaranovich/megal",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    6
                ]
            ]
        },
        "title": "A megamodeling language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/krasvas/EyeMMV",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    7
                ]
            ]
        },
        "title": "EyeMMV toolbox is a MATLAB toolbox appropriate for post experimental eye movement analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mit-crpg/openmc",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    21
                ]
            ]
        },
        "title": "OpenMC Monte Carlo Code",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bonniee/ultrasonic",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    10
                ]
            ]
        },
        "title": "An ultrasonic encoder / decoder for Python. Final project for COS597G.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Katee/quietnet",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    1
                ]
            ]
        },
        "title": "Simple chat program using inaudible sounds and a computer's microphone and speaker.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/neo4j/spatial",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    10
                ]
            ]
        },
        "title": "Neo4j Spatial is a library of utilities for Neo4j that faciliates the enabling of spatial operations on data. In particular you can add spatial indexes to already located data, and perform spatial operations on the data like searching for data within specified regions or within a specified distance of a point of interest. In addition classes are provided to expose the data to geotools and thereby to geotools enabled applications like geoserver and uDig.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fpdetective/fpdetective",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    27
                ]
            ]
        },
        "title": "A framework for conducting large scale web privacy studies.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/parthatalukdar/junto",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    27
                ]
            ]
        },
        "title": "This toolkit consists of implementations of various graph-based semi-supervised learning (SSL) algorithms. Currently, three algorithms are implemented: Gaussian Random Fields (GRF), Adsorption, and Modified Adsorption (MAD). Junto also contains Hadoop-based implementations of these three algorithms.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MetricsGrimoire/CVSAnalY",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    11
                ]
            ]
        },
        "title": "The CVSAnalY tool extracts information out of source code repository logs and stores it into a database.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chrisdembia/yeadon",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    17
                ]
            ]
        },
        "title": "The human inertia model developed by Fred Yeadon in 1990.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nexr/RHive",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    27
                ]
            ]
        },
        "title": "RHive is an R extension facilitating distributed computing via Apache Hive.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kraftlj/FRAP-Toolbox",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    6
                ]
            ]
        },
        "title": "Software for the analysis of Fluorescence Recovery After Photobleaching",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ugovaretto/cuda-mpi-scratch",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    16
                ]
            ]
        },
        "title": "Scratchpad for testing cuda-mpi interoperability",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pmcrosta/eps",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    16
                ]
            ]
        },
        "title": "Student Enrollment Patterns and Graphics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/joyent/node",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    27
                ]
            ]
        },
        "title": "evented I/O for v8 javascript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kkashin/panelAR",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    4
                ]
            ]
        },
        "title": "R package for Estimation of Linear AR(1) Panel Data Models",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bkarak/data_paper_msr2014",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    16
                ]
            ]
        },
        "title": "Data Paper for MSR2014",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Programming-Systems-Lab/vmvm",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    12
                ]
            ]
        },
        "title": "VMVM: Unit Test Virtualization for Java",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JustGlowing/minisom",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    3
                ]
            ]
        },
        "title": "MiniSom is a minimalistic implementation of the Self Organizing Maps",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lh3/wgsim",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    22
                ]
            ]
        },
        "title": "Reads simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cnugteren/rooflineDVFS",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    17
                ]
            ]
        },
        "title": "Online appendix to the scientific article \"Roofline-aware DVFS for GPUs\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gablab/murfi2",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    6
                ]
            ]
        },
        "title": "The realtime fMRI software platform - an MIT-MGH collaboration",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NetFPGA/netfpga",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    10
                ]
            ]
        },
        "title": "NetFPGA 1G infrastructure and gateware",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/muscar/blueprint",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    18
                ]
            ]
        },
        "title": "Blueprint language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lzhang10/maxent",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    2
                ]
            ]
        },
        "title": "Maximum Entropy Modeling Toolkit for Python and C++",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kopl/misc",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    18
                ]
            ]
        },
        "title": "Miscellaneous content published by the project such as examples, publications, etc.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tamarin-prover/tamarin-prover",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    22
                ]
            ]
        },
        "title": "Main repository of the Tamarin prover for security protocol verification.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openphacts/OPS-Knime",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    22
                ]
            ]
        },
        "title": "Project for integration of OPS and the Knime workflow engine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DigitalCurationCentre/dccpaper",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    6
                ]
            ]
        },
        "title": "LaTeX classes for IJDC and IDCC papers.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mauriceling/dose",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    19
                ]
            ]
        },
        "title": "Digital Organism Simulation Environment (DOSE)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/folivetti/HBLCoClust",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    7
                ]
            ]
        },
        "title": "Hash-based Linear Co-Clustering",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GaloisInc/HaLVM",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    29
                ]
            ]
        },
        "title": "The Haskell Lightweight Virtual Machine (HaLVM): GHC running on Xen",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CreativeCodingLab/aluminum",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    20
                ]
            ]
        },
        "title": "Lightweight, relatively minimal OpenGL framework that supports openGL 3.2+ on osx/cocoa and linux/freeglut and includes some common functionality (text, textures, models, shading, etc) and also stereographic rendering. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CertiVox/MIRACL",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    6
                ]
            ]
        },
        "title": "MIRACL Cryptographic SDK: Multiprecision Integer and Rational Arithmetic Cryptographic Library is a C software library that is widely regarded by developers as the gold standard open source SDK for elliptic curve cryptography (ECC).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cfio/cfio",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    25
                ]
            ]
        },
        "title": "An I/O library for climate models, named CFIO(Climate Fast I/O).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kerneis/qemu",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    9
                ]
            ]
        },
        "title": "GSoC CPC-QEMU Repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cetic/6lbr",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    8
                ]
            ]
        },
        "title": "A deployment-ready 6LoWPAN Border Router solution based on Contiki",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DasLab/NA_thermo",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    17
                ]
            ]
        },
        "title": "NA_thermo is a small archive of primer design and nucleic acid thermodynamic scripts used by the Das lab at Stanford for high-throughput RNA synthesis and design.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/d3scomp/JDEECo",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    17
                ]
            ]
        },
        "title": "JDEECo is a Java implementation of the DEECo component system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RILAB/siftmappR",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    5
                ]
            ]
        },
        "title": "relate amino acid polymorphism to SNP positions and to results from SIFT/MAPP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zeromq/jeromq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    1
                ]
            ]
        },
        "title": "Pure Java ZeroMQ ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/TubeTK/pydstk",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    1
                ]
            ]
        },
        "title": "Python Dynamical Systems Toolkit.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/seatgeek/fuzzywuzzy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    8
                ]
            ]
        },
        "title": "Fuzzy String Matching in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/WindowsAzure/azure-sdk-tools-xplat",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    2
                ]
            ]
        },
        "title": "Windows Azure Cross Platform Command Line",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mmig/mmir-starter-kit",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    18
                ]
            ]
        },
        "title": "MMIR - Multimodal Mobile Interaction and Rendering framework - Starter Kit - a small example application for MMIR",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hannorein/open_exoplanet_catalogue",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    11
                ]
            ]
        },
        "title": "The Open Exoplanet Catalogue",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/satra/SLT",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    25
                ]
            ]
        },
        "title": "SpeechLab Toolkit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/TissueFluid/yaffs2-recovery",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    18
                ]
            ]
        },
        "title": "Historaical data recovery on YAFFS2",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/avirkki/Locida",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    13
                ]
            ]
        },
        "title": "A Web Interface and an R package for NMR Local Intensity Difference Analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lxnay/ubuild",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    17
                ]
            ]
        },
        "title": "toolkit for building embedded system images based on the Linux kernel",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JDRomano2/ASAP2",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    23
                ]
            ]
        },
        "title": "Successor to ASAP (doi:10.1186/1471-2105-9-103). A phylogenomic solution for investigating the evolutionary history of a set of (potentially related) genes.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/marbl/metAMOS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    16
                ]
            ]
        },
        "title": "A metagenomic and isolate assembly and analysis pipeline built with AMOS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ucbl/DataConf",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    7
                ]
            ]
        },
        "title": "DataConf is a java web application mobile oriented providing a powerfull exploration of the linked-data paradigm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sebastianbergmann/phpunit",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    24
                ]
            ]
        },
        "title": "The PHP Unit Testing framework.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MOBle/PostNewtonian",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    28
                ]
            ]
        },
        "title": "Sympy code to collect and process terms for various post-Newtonian (PN) equations, and to generate working python/C/C++/etc. code to compute PN waveforms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jexp/cypher-rs",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    10
                ]
            ]
        },
        "title": "Configurable Cypher REST endpoints",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/eishay/jvm-serializers",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    25
                ]
            ]
        },
        "title": "Benchmark comparing serialization libraries on the JVM ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/formare/auctions",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    23
                ]
            ]
        },
        "title": "Auction Theory Toolbox – Computer Verified Auctions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nakkaya/alter-ego",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    15
                ]
            ]
        },
        "title": "A reactive AI library based on the concept of behavior trees.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nxcorr-tuned/code2d",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    22
                ]
            ]
        },
        "title": "normalized cross-correlation in 2D",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ghillairet/emfjson",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    20
                ]
            ]
        },
        "title": "EMF Binding for JSON",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/slzhao/MultiRankSeq",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    4
                ]
            ]
        },
        "title": "MultiRankSeq",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kornl/gMCP",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    13
                ]
            ]
        },
        "title": "gMCP - Graph Based Multiple Comparison Procedures (an R package with a Java GUI)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/j5at/AndroidAVDRepo",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    14
                ]
            ]
        },
        "title": "A collection of pre-configured Android emulator configuration files (AVD and ini files)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tacaswell/leidenfrost",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    4
                ]
            ]
        },
        "title": "Private code repo for all things Leidenfrost related ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davcraig75/tgen_somaticSV",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    27
                ]
            ]
        },
        "title": "tgen_somaticSV",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/diazona/interp2d",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    22
                ]
            ]
        },
        "title": "A 2D interpolation library compatible with GSL.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RefactoringTools/WSToolkit",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    24
                ]
            ]
        },
        "title": "A toolkit for property-based testing of web services and for test code evolution",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RefactoringTools/Wrangler",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    19
                ]
            ]
        },
        "title": "Import of the Wrangler svn repository.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/maniacchallenge/2013",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    29
                ]
            ]
        },
        "title": "Code for the 2013 Maniac Challenge (API and Strategies) held at the FU Berlin. Authors: Fabian Brandt, Tim Scheuermann, Lennart Dührsen, Andreas Reuter and Lotte Steenbrink.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simongog/sdsl-lite",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    28
                ]
            ]
        },
        "title": "Succinct Data Structure Library 2.0",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ucd-spatial/Datasets",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    25
                ]
            ]
        },
        "title": "Various Open Datasets used for experiments and research projects",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LabAdvComp/UDR",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    16
                ]
            ]
        },
        "title": "A UDT wrapper for rsync that improves throughput of large data transfers over long distances.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hackscience/quicknet",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    28
                ]
            ]
        },
        "title": "A scalable network simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dcm4che/dcm4chee-arc",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    27
                ]
            ]
        },
        "title": "DICOM archive J2EE application",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/claesenm/approxsvm",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    1
                ]
            ]
        },
        "title": "Approximating nonlinear SVM models with RBF kernel.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AutonomyLab/ardrone_autonomy",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    15
                ]
            ]
        },
        "title": "\"ardrone_autonomy\" is a ROS driver for Parrot AR-Drone quadrocopter. This driver is based on official AR-Drone SDK version 2.0 and supports both AR-Drone 1.0 and 2.0.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/WMD-Bath/MacroDensity",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    17
                ]
            ]
        },
        "title": "Analyse VASP density & potential grids using python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JohnReid/STEME",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    25
                ]
            ]
        },
        "title": "An efficient accurate motif finder based on MEME and implemented using suffix arrays",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JetBrains/MPS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    15
                ]
            ]
        },
        "title": "JetBrains Meta programming System",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vesselinux/yaarx",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    9
                ]
            ]
        },
        "title": "Yet Another Toolkit for Analysis of ARX Cryptographic Algorithms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SWIMProjectUCB/SWIM",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    2
                ]
            ]
        },
        "title": "Statistical Workload Injector for MapReduce - Project at UC Berkeley AMP Lab",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pipitone/MAGeTbrain",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    13
                ]
            ]
        },
        "title": "Multiple Automatically Generated Templates brain segmentation algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/citation-style-language/schema",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    17
                ]
            ]
        },
        "title": "Citation Style Language schema",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brycesandlund/4x4TicTacToe",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    8
                ]
            ]
        },
        "title": "Repository for code for 4x4 Tic-Tac-Toe Project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nvcuong/HOSemiCRF",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    24
                ]
            ]
        },
        "title": "High-order Semi-Markov Conditional Random Field",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/niitsuma/Racket-miniKanren",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    27
                ]
            ]
        },
        "title": "Canonical miniKanren implementation in Racket ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wg/wrk",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    20
                ]
            ]
        },
        "title": "Modern HTTP benchmarking tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zxing/zxing",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    12
                ]
            ]
        },
        "title": "Official ZXing (\"Zebra Crossing\") project home",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vienlam/Geo",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    15
                ]
            ]
        },
        "title": "Web service for converting WGS 84 - Lamber 93",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/psinger/PathTools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    8
                ]
            ]
        },
        "title": "A collection of tools and algorithms suitable to work with paths (e.g., navigational)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vnminin/phylomap",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    16
                ]
            ]
        },
        "title": "R package for phylogenetic stochastic mapping, including a new method that bypasses matrix exponentiation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LaurentGomila/SFML",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    25
                ]
            ]
        },
        "title": "Simple and Fast Multimedia Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kreveik/Kreveik",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    20
                ]
            ]
        },
        "title": "Random Boolean Network analysis module in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pedrormjunior/vlpl",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    22
                ]
            ]
        },
        "title": "Vehicle license plate location (VLPL) algorithms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/leocherubini/ambienteVirtual",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    1
                ]
            ]
        },
        "title": "Este projeto tem como objetivo apresentar os principais arquivos javascript e o respectivo objeto 3d wavefront, do ambiente virtual de ensino de Biologia. Na pasta javascripts contém todos os arquivos javascript necessários para a criação do ambiente virtual, e na pasta images apresenta o arquivo wavefront responsável por representar o objeto no ambiente 3d.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Sensorcon/Sensordrone-Control",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    9
                ]
            ]
        },
        "title": "The first official Sensordrone App from Sensorcon",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mllewis/refComplexity",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    4
                ]
            ]
        },
        "title": "Writeup, data and analysis scripts for cogsci 2014 paper (Lewis, Sugarman, and  Frank).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mrhunsaker/Change_Point",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    15
                ]
            ]
        },
        "title": "Change Point Algorithm from Randy Gallistel rewritten in R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gracaninja/lxmls-toolkit",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    6
                ]
            ]
        },
        "title": "Machine Learning applied to Natural Language Processing Toolkit used in the Lisbon Machine Learning Summer School",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AccelerateHS/accelerate",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    8
                ]
            ]
        },
        "title": "Embedded language for high-performance array computations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cutr-at-usf/opentripplanner-for-android",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    23
                ]
            ]
        },
        "title": "An Android app for multi-modal trip planning and navigation using any OpenTripPlanner server.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rmtheis/android-ocr",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    22
                ]
            ]
        },
        "title": "Experimental app for optical character recognition on Android.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/maniacbug/RF24",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    19
                ]
            ]
        },
        "title": "Arduino driver for nRF24L01",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mattam82/groupoid",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    23
                ]
            ]
        },
        "title": "Groupoid interpretation of type theory",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tigoe/beginningnfc",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    26
                ]
            ]
        },
        "title": "A repo for code samples in the book \"Beginning NFC\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simhu/cubical",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    19
                ]
            ]
        },
        "title": "Implementation of Univalence in Cubical Sets",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RichardWarburton/java-8-lambdas-exercises",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    9
                ]
            ]
        },
        "title": "Exercises and Answers for Java 8 Lambdas book",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/leepike/SmartCheck",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    10
                ]
            ]
        },
        "title": "A Smarter QuickCheck",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/stanfill/rotationsC",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    21
                ]
            ]
        },
        "title": "Code to run interval simulations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dyurovsky/ATT-WORD",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    19
                ]
            ]
        },
        "title": "Salience and Gaze in Early Word Learning",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andythomas/TeX-sidenotes",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    22
                ]
            ]
        },
        "title": "This package allows the typesetting of manuscripts with notes, figures, citations, captions and tables in the margin, which is common e.g. in science textbooks or theses. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arbenson/mrnmf",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    25
                ]
            ]
        },
        "title": "Nonnegative matrix factorizations in MapReduce",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rossibarra/r_buffet",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    14
                ]
            ]
        },
        "title": "A veritable smorgasboard of (bad) r code ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/t-crest/poseidon",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    6
                ]
            ]
        },
        "title": "Static NoC TDM scheduler",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pavel-fibich/TRADER",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    13
                ]
            ]
        },
        "title": "Tree Ring Analysis of Disturbance Events in R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/trickl/trickl-cluster",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    3
                ]
            ]
        },
        "title": "Contains clustering algorithms, including k-means, k-medoids and some kernel based algorithms.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/phonegap/phonegap-plugins",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    7
                ]
            ]
        },
        "title": "(DEPRECATED) Plugins for use with PhoneGap. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jojuva/playq-a",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    6
                ]
            ]
        },
        "title": "Play Q&A",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ppapadeas/fxos-qreader",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    31
                ]
            ]
        },
        "title": "QR Reader for Firefox OS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/WebIDauth/WebIDauth",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    10
                ]
            ]
        },
        "title": "WebID authentication libraries.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rbjarnason/your-priorities",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    23
                ]
            ]
        },
        "title": "Your Priorities is a web based platform that enables groups of people to prioritize their democratic ideas and together discover which are the most important ideas to implement.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mybatis/spring",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    17
                ]
            ]
        },
        "title": "Spring integration for MyBatis 3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/punbb/langs",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    25
                ]
            ]
        },
        "title": "Language packs for PunBB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sebastianbergmann/phpdcd",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    29
                ]
            ]
        },
        "title": "Dead Code Detector (DCD) for PHP code.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/indra-uolles/solution_tracer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    13
                ]
            ]
        },
        "title": "A checking students' input subsystem for model-tracing intelligent tutoring systems",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tbuktu/bigint",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    8
                ]
            ]
        },
        "title": "An asymptotically fast version of java.math.BigInteger",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/treecode/Bonsai",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    14
                ]
            ]
        },
        "title": "Bonsai GPU tree code",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/puku0x/cvdrone",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    20
                ]
            ]
        },
        "title": "CV Drone (= OpenCV + AR.Drone)   ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Pirngruber/AndroidIM",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    18
                ]
            ]
        },
        "title": "Android Instant Messaging Application",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bps10/color",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    1
                ]
            ]
        },
        "title": "a color perception model",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hhu-stups/pyB",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    5
                ]
            ]
        },
        "title": "pyB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rueckstiess/expsuite",
        "issued": {
            "date-parts": [
                [
                    2009,
                    6,
                    26
                ]
            ]
        },
        "title": "PyExperimentSuite is an open source software tool written in Python, that supports scientists, engineers and others to conduct automated software experiments on a larger scale with numerous different parameters. It reads parameters (or ranges of parameters) from a configuration file, runs the experiments using multiple cores if desired and logs the results in files. Parameter combinations can be evaluated as a grid (each combination of parameters) or in a list (try several defined parameter combinations in row). PyExperimentSuite also supports continuing any experiments where left off when the execution was interrupted (e.g. power failure, process was killed, etc.). The experiment results can be obtained in different ways by a built-in Python interface.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/christopherhenard/mutalog",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    23
                ]
            ]
        },
        "title": "MutaLog - a Tool for Mutating Logic Formulas",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/named-data/vndn",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    25
                ]
            ]
        },
        "title": "V-NDN: an implementation of NDN for vehicular networks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bendisposto/prob2",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    21
                ]
            ]
        },
        "title": "ProB 2.0 ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CliqueCounter/QkCount",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    26
                ]
            ]
        },
        "title": "Counting small cliques in large graphs using MapReduce.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dbushell/Pikaday",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    8
                ]
            ]
        },
        "title": "A refreshing JavaScript Datepicker — lightweight, no dependencies, modular CSS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kcl-ddh/kiln",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    5
                ]
            ]
        },
        "title": "Kiln is a multi-platform framework for building and deploying complex websites whose source content is primarily in XML. It brings together various independent software components into an integrated whole that provides the infrastructure and base functionality for such sites.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/echonest/pyechonest",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    19
                ]
            ]
        },
        "title": "Python client for the Echo Nest API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sixohsix/twitter",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    15
                ]
            ]
        },
        "title": "Python Twitter API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tomstafford/axongame",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    30
                ]
            ]
        },
        "title": "Data from the online game Axon and code for for analysing it ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ruping/Breakpointer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    25
                ]
            ]
        },
        "title": "Breakpointer is a fast algorithm to locate breakpoints of structural variants from single-end reads produced by next-generation sequencing. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/terceiro/egypt",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    11
                ]
            ]
        },
        "title": "DEPRECATED. See analizo insted",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jirislaby/LLVMSlicer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    16
                ]
            ]
        },
        "title": "Static Slicer for LLVM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/relevance/blue-ridge",
        "issued": {
            "date-parts": [
                [
                    2008,
                    7,
                    31
                ]
            ]
        },
        "title": "Framework for  JavaScript Testing (currently a Rails Plugin)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pezmaster31/bamtools",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    21
                ]
            ]
        },
        "title": "C++ API & command-line toolkit for working with BAM data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hep-gc/cloud-scheduler",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    19
                ]
            ]
        },
        "title": "Automatically boot VMs for your HTC jobs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rproepp/spykeviewer",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    15
                ]
            ]
        },
        "title": "Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeffamcgee/friendloc",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    3
                ]
            ]
        },
        "title": "Friendly Location - estimates the locations of users on twitter",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/skomazec/Sparkweave",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    14
                ]
            ]
        },
        "title": "Schema enhanced pattern matching over RDF data streams",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BLLIP/bllip-parser",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    27
                ]
            ]
        },
        "title": "Official repository for the BLLIP reranking parser (also known as Charniak-Johnson parser, Charniak parser, Brown reranking parser) See http://pypi.python.org/pypi/bllipparser/ for Python module.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/indraniel/fqgrep",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    15
                ]
            ]
        },
        "title": "An approximate sequence pattern matcher for FASTQ/FASTA files.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BEETL/BEETL",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    8
                ]
            ]
        },
        "title": "BEETL",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/spficklin/RMTGeneNet",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    8
                ]
            ]
        },
        "title": "Package that employs Random Matrix Theory (RMT) for thresholding of a gene co-expression network.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cbarbu/spatcontrol",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    12
                ]
            ]
        },
        "title": "spatcontrol - A package to perform analysis on spatial data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/blanu/Dust",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    27
                ]
            ]
        },
        "title": "A Polymorphic Engine for Filtering-Resistant Transport Protocols",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/geodb/db3dcore",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    8
                ]
            ]
        },
        "title": "The DB4GeO/DB3D Kernel is a completely in Java written library of 3D geometric data types (and its methods) and it even provides the possibility to build topologically defined nets (for example triangle nets) as well as access to a fast spatial index on the geometry data. A predecessor of the API called GeoToolKit has been developed at the Collaborative Research Centre 350 at Bonn University. DB4GeO is now maintained by the Chair in Geoinformatics (Prof. Breunig) of the Karlsruhe Institute of Technology. All of the textual data is coded in UTF-8.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/InformationIntegrationGroup/Web-Karma-Public",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    15
                ]
            ]
        },
        "title": "Information Integration Tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/svenfuchs/i18n",
        "issued": {
            "date-parts": [
                [
                    2008,
                    6,
                    13
                ]
            ]
        },
        "title": "Internationalization (i18n) library for Ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hit-moodle/onlinejudge",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    8
                ]
            ]
        },
        "title": "Online judge plugin for Moodle 1.9.x",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/patrickpollet/moodlews_gson",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    26
                ]
            ]
        },
        "title": "This is a collection of Java classes that allow easy access to OK Tech Moodle Web Service using REST protocol  and JSON output format  from Java clients using GSON library such as Android  but also regular java programs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/patrickpollet/moodlews",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    29
                ]
            ]
        },
        "title": "Soap (and now REST) Web Service implementation for Moodle 1.9 and later",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Kazuo256/luxproject",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    4
                ]
            ]
        },
        "title": "A Lua module that puts lot of utilities together.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/henriquegemignani/etherclan",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    25
                ]
            ]
        },
        "title": "A distributed network with the purpose of finding peers for your game.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zhum/hoplang",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    3
                ]
            ]
        },
        "title": "Hoplang is revolutional data processing language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jubatus/jubatus",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    25
                ]
            ]
        },
        "title": "Framework and Library for Distributed Online Machine Learning",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ntamas/biopython",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    6
                ]
            ]
        },
        "title": "Fork of Biopython to work on Gene Ontology support.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kua/scblog",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    5
                ]
            ]
        },
        "title": "KP-based integration of Smart Conference System and Blogging Service",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sommeru/riech-o-mat",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    21
                ]
            ]
        },
        "title": "Software for controlling an automatic smelling machine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GeneDesign/GeneDesign",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    4
                ]
            ]
        },
        "title": "Synthetic biology library in Perl",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bwallace/OpenMeta-analyst-",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    31
                ]
            ]
        },
        "title": "intuitive software for advanced meta-analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tanghaibao/quota-alignment",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    8
                ]
            ]
        },
        "title": "Guided synteny alignment between duplicated genomes (within specified quota constraint)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rconfalonieri/posPsmodels",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    19
                ]
            ]
        },
        "title": "Uncertainty and Preference-Aware Solver Based on Answer Set Programming",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dwinter/mmod",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    20
                ]
            ]
        },
        "title": "Differentiation statistics in R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/phauly/wiki-network",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    5
                ]
            ]
        },
        "title": "Extract a (social) network from a mediawiki dump",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/faircloth-lab/edittag",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    17
                ]
            ]
        },
        "title": "edit distance sequence tags and helpers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vkaravir/js-parsons",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    22
                ]
            ]
        },
        "title": "js-parsons",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hannorein/rebound",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    2
                ]
            ]
        },
        "title": "An open-source multi-purpose N-body code for collisional dynamics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/OneGeek/WebGLU",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    26
                ]
            ]
        },
        "title": "WebGLU is both a set of low-level utilities and a high-level engine for developing WebGL based applications. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/johncolby/along-tract-stats",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    11
                ]
            ]
        },
        "title": "A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bittorrent/libutp",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    20
                ]
            ]
        },
        "title": "uTorrent Transport Protocol library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/epics/reconos",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    3
                ]
            ]
        },
        "title": "ReconOS operating system version 3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sglanger/ddw",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    26
                ]
            ]
        },
        "title": "DICOM Data Warehouse: a MIRTH channel and postgresQL dbase for DICOM data mining",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/amacinho/Name-Gender-Guesser",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    12
                ]
            ]
        },
        "title": "Guesses the gender of the names.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chmaruni/XSched",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    4
                ]
            ]
        },
        "title": "Explicit Scheduling for Java",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/evolvingweb/ajax-solr",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    6
                ]
            ]
        },
        "title": "A JavaScript framework for creating user interfaces to Solr.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/socketstream/socketstream",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    14
                ]
            ]
        },
        "title": "A fast, modular Node.js web framework dedicated to building realtime single-page apps",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jvehent/AFW",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    18
                ]
            ]
        },
        "title": "Advanced FireWall cookbook for Chef and Linux that uses Iptables and to dynamically configure inbound and outbound rules on each node.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/renozao/doRNG",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    25
                ]
            ]
        },
        "title": "R package - Generic Reproducible Parallel Backend for foreach",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CrossRef/cn_proxy",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    17
                ]
            ]
        },
        "title": "Content Negotiation Proxy for CrossRef DOIs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/puppetlabs/puppetlabs-rabbitmq",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    22
                ]
            ]
        },
        "title": "RabbitMQ Puppet Module",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ohadlevy/puppet-foreman",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    19
                ]
            ]
        },
        "title": "UNOFFICIAL CLONE use https://github.com/theforeman/foreman-installer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jxxcarlson/sf2sound",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    20
                ]
            ]
        },
        "title": "a unix command-line program to create sound files from text such as :moderato: do re mi.  Uses Python and C.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sstephenson/stitch",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    18
                ]
            ]
        },
        "title": "Stitch your CommonJS modules together for the browser",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sabinmarcu/stitch",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    20
                ]
            ]
        },
        "title": "Stitch your CommonJS modules together for the browser",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Eyescale/Equalizer",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    28
                ]
            ]
        },
        "title": "Equalizer is the standard middleware to create and deploy parallel OpenGL-based applications. It enables applications to benefit from multiple graphics cards, processors and computers to scale the rendering performance, visual quality and display size. An Equalizer application runs unmodified on any visualization system, from a simple workstation to large scale graphics clusters, multi-GPU workstations and Virtual Reality installations.  ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/indexzero/ux-logging-toolkit",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    6
                ]
            ]
        },
        "title": "A toolkit of WPF behaviors and services for logging UX events in a sessions aware manner.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ghorn/dvda",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    30
                ]
            ]
        },
        "title": "Symbolic expressions and algorithmic differentiation in Haskell.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simvisage/spirrid",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    13
                ]
            ]
        },
        "title": "Tool for estimation of statistical characteristics of multivariate random functions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dill/dsm",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    9
                ]
            ]
        },
        "title": "Density surface modelling for distance sampling.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/slayoo/icicle",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    15
                ]
            ]
        },
        "title": "2D kinematic cloud model based on libmpdata++ and libcloudph++",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/b45ch1/taylorpoly",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    23
                ]
            ]
        },
        "title": "vectorized taylor polynomial algorithms written in ansi C and python.ctypes wrapper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vforget/cgb",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    12
                ]
            ]
        },
        "title": "Custom UCSC Genome Browser",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kergoth/tslib",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    11
                ]
            ]
        },
        "title": "Touchscreen access library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sahg/PyTOPKAPI",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    27
                ]
            ]
        },
        "title": "The official PyTOPKAPI repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aothms/ear",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    2
                ]
            ]
        },
        "title": "Evaluation of Acoustics using Ray-tracing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mbostock/d3",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    27
                ]
            ]
        },
        "title": "A JavaScript visualization library for HTML and SVG.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SoundScapeRenderer/android-remote",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    8
                ]
            ]
        },
        "title": "SSR Remote for Android",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/progschj/clp",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    2
                ]
            ]
        },
        "title": "A OpenCL wrapper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/loleg/green-street",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    9
                ]
            ]
        },
        "title": "How green is my street? A Make.Opendata.ch project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SchedMD/slurm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    20
                ]
            ]
        },
        "title": "Slurm: A Highly Scalable Resource Manager",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pepe/questionnaire",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    24
                ]
            ]
        },
        "title": "simple questionnaire for my wifes disert theme",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tomason/anadix",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    15
                ]
            ]
        },
        "title": "Tool for analyzing web pages compliance with Section508 ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/voldemort/voldemort",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    31
                ]
            ]
        },
        "title": "An open source clone of Amazon's Dynamo.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/xfim/ggmcmc",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    17
                ]
            ]
        },
        "title": "Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CESNET/torque",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    12
                ]
            ]
        },
        "title": "MetaCentrum fork of Torque batch system used on the Czech National Grid",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kasei/perlrdf",
        "issued": {
            "date-parts": [
                [
                    2008,
                    4,
                    4
                ]
            ]
        },
        "title": "Official releases of RDF::Query may be found on CPAN: http://search.cpan.org/dist/RDF-Query/",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/goerz/procimap",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    6
                ]
            ]
        },
        "title": "Python library for working with IMAP mailboxes (beta)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arashpayan/appirater",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    7
                ]
            ]
        },
        "title": "A utility that reminds your iPhone app's users to review the app.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/orbeckst/GromacsWrapper",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    6
                ]
            ]
        },
        "title": "GromacsWrapper is a python package that wraps system calls to Gromacs tools into thin classes. This allows for fairly seamless integration of the gromacs tools into python scripts. This is generally superior to shell scripts because of python’s better error handling and superior data structures. It also allows for modularization and code re-use. In addition, commands, warnings and errors are logged to a file so that there exists a complete history of what has been done.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/muricoca/crab",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    19
                ]
            ]
        },
        "title": "Crab is a flexible, fast recommender engine for Python that integrates classic information filtering recommendation algorithms in the world of scientific Python packages (numpy, scipy, matplotlib).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cteplovs/fargo",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    11
                ]
            ]
        },
        "title": "Formative Assessment using Repertory Grid Online",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rec3141/pangenome",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    9
                ]
            ]
        },
        "title": "Models of the Microbial Pangenome",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/haskell-distributed/distributed-process",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    23
                ]
            ]
        },
        "title": "Cloud Haskell Core Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bruce/twfy",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    17
                ]
            ]
        },
        "title": "Ruby binding for TheyWorkForYou.com API (keep tabs on representatives in Parliament and other assemblies)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MADAI/MADAIWorkbench",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    28
                ]
            ]
        },
        "title": "ParaView customized for the MADAI Project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sneakyness/SneakyInput",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    22
                ]
            ]
        },
        "title": "An Input Framework for iOS gaming.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/johnglover/modal",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    6
                ]
            ]
        },
        "title": "Musical Onset Database And Library (Modal)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wdenton/c4lj-dentographs",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    21
                ]
            ]
        },
        "title": "Code in \"On Dentographs, A New Method of Visualizing Library Collections,\" published in The Code4Lib Journal issue 16 (January 2012).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cbockermann/streams",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    5
                ]
            ]
        },
        "title": "A simple streaming API for handling data-streams (deprecated, project moved to https://bitbucket.org/cbockermann/streams)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mitsuhiko/iskratch",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    23
                ]
            ]
        },
        "title": "University project for a Scratch inspired application for HTML5 touch devices",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pokeb/asi-http-request",
        "issued": {
            "date-parts": [
                [
                    2008,
                    7,
                    14
                ]
            ]
        },
        "title": "Easy to use CFNetwork wrapper for HTTP requests, Objective-C,  Mac OS X and iPhone",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mharlan/joinFS",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    11
                ]
            ]
        },
        "title": "A semantic hierarchical file system for Linux.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BryanHunt/mongo-emf",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    9
                ]
            ]
        },
        "title": "MongoDB - EMF Binding",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gre/chess-game",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    22
                ]
            ]
        },
        "title": "A sample Chess Game made with HTML5 and CSS3 and targeting multi plateform. (made for \"HTML5 Game Most Wanted\") - the game is not fully finished but illustrates some concepts explained in the book",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RubenVerborgh/RESTdesc-Composition-Benchmark",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    5
                ]
            ]
        },
        "title": "A benchmark suite for RESTdesc composition.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/inti/FORGE",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    15
                ]
            ]
        },
        "title": "This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/agl/jbig2enc",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    29
                ]
            ]
        },
        "title": "JBIG2 Encoder",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dubochet/scala-reflection",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    29
                ]
            ]
        },
        "title": "The Scala reflection library is intended to provide developers with a means to reflect on Scala programs in a way that exposes structures corresponding to the Scala source being reflected upon.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ppgardne/RNIE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    19
                ]
            ]
        },
        "title": "A package for predicting Rho independent terminators in bacterial genomes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fozziethebeat/C-Cat",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    14
                ]
            ]
        },
        "title": "A collection of tools for applying word senses to large corpora",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hadley/lubridate",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    11
                ]
            ]
        },
        "title": "Make working with dates in R just that little bit easier",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/olpa/tex",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    8
                ]
            ]
        },
        "title": "tex-related tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dbravender/qc",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    28
                ]
            ]
        },
        "title": "A Quickcheck implementation for Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ned14/nedmalloc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    12
                ]
            ]
        },
        "title": "An EXTREMELY FAST portable thread caching malloc implementation written in C for multiple threads without lock contention based on dlmalloc. Optimised for x86 and x64. Compatible with C++. Can patch itself into existing binaries on Windows.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/oseledets/TT-Toolbox",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    25
                ]
            ]
        },
        "title": "The git repository for the TT-Toolbox",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andreasvc/disco-dop",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    13
                ]
            ]
        },
        "title": "Discontinuous Data-Oriented Parsing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mark-burnett/filament-dynamics",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    3
                ]
            ]
        },
        "title": "Stochastic simulations of biological filaments, especially actin.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mjpost/dptsg",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    8
                ]
            ]
        },
        "title": "Bayesian inference for learning Tree Substitution Grammars",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/peplin/astral",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    17
                ]
            ]
        },
        "title": "A P2P content distribution network for live video",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mikechambers/as3corelib",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    28
                ]
            ]
        },
        "title": " An ActionScript 3 Library that contains a number of classes and utilities for working with ActionScript? 3. These include classes for MD5 and SHA 1 hashing, Image encoders, and JSON serialization as well as general String, Number and Date APIs.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/xetorthio/jedis",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    11
                ]
            ]
        },
        "title": "A blazingly small and sane redis java client",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/saltastro/timDIMM",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    18
                ]
            ]
        },
        "title": "Software used in operation the SAAO seeing monitor system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/asl/rssa",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    27
                ]
            ]
        },
        "title": "R package for Singular Spectrum Analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/failys/CAIRIS",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    21
                ]
            ]
        },
        "title": "Computer Aided Integration of Requirements and Information Security",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fxtentacle/eQTL-GWT-Cassandra",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    27
                ]
            ]
        },
        "title": "This web application is based on Google Web Toolkit and Apache Cassandra and allows the user to dynamically investigate expression QTL and their associated gene position and locus.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/boyle/meagre-crowd",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    13
                ]
            ]
        },
        "title": "Performance testing for sparse matrix solvers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pc2/hetsched",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    17
                ]
            ]
        },
        "title": "Heterogeneous Scheduler",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/naoyam/physis",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    7
                ]
            ]
        },
        "title": "High-level framework for stencil computations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lamberta/html5-animation",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    24
                ]
            ]
        },
        "title": "Foundation HTML5 Animation with JavaScript example code and book exercises.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davidwhogg/SelfCalibration",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    24
                ]
            ]
        },
        "title": "code and documents related to self-calibration and uber-calibration projects",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nethoncho/Arduino-DHT22",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    19
                ]
            ]
        },
        "title": "Arduino library for the DHT22 humidity and temperature sensor",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/inet-framework/inet-doc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    21
                ]
            ]
        },
        "title": "Manual for the INET Framework of OMNeT++",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/briandk/granovaGG",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    6
                ]
            ]
        },
        "title": "Bob Pruzek and Jim Helmreich's implementation of Elemental Graphics for Analysis of Variance",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/secgroup/xxblind",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    23
                ]
            ]
        },
        "title": "eXtremely fast data eXtraction via blind SQL injection",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lh3/fermi",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    6
                ]
            ]
        },
        "title": "A WGS de novo assembler based on the FMD-index for large genomes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rterrabh/DCL",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    28
                ]
            ]
        },
        "title": "DCL, a dependency constraint language for Java",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/astatham/Bisulfite-seq-pipeline",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    4
                ]
            ]
        },
        "title": "A series of scripts to process Illumina Bisulfite-Seq Data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jbrown81/umcp",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    5
                ]
            ]
        },
        "title": "A set of Python programs used to calculate connectivity metrics from a variety of neuroimaging modalities including diffusion weighted MRI (DTI/DSI), fMRI, and structural MRI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/turadg/ning-tools",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    8
                ]
            ]
        },
        "title": "Tools for collecting data from Ning sites",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mirage/orm",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    13
                ]
            ]
        },
        "title": "Object Relational Mapper extension",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simongog/sdsl",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    22
                ]
            ]
        },
        "title": "Succinct Data Structure Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/farr/mcmc-ocaml",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    22
                ]
            ]
        },
        "title": "OCaml Markov Chain Monte Carlo",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nes1983/selenium-bench",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    20
                ]
            ]
        },
        "title": "Little helper script that benchmarks the Seaside Sushi store.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shanest/OntologyCV",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    10
                ]
            ]
        },
        "title": "Files for a computational biology project to extract a cardiovascular ontology from Foundational Model of Anatomy and use it to label a left ventricle atlas and then locate regions of interest in experiments.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cgrand/parsley",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    7
                ]
            ]
        },
        "title": "a DSL for creating total and truly incremental parsers in Clojure",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cgrand/moustache",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    11
                ]
            ]
        },
        "title": "a micro web framework/internal DSL to wire Ring handlers and middlewares",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/larsgeorge/hbase-book",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    12
                ]
            ]
        },
        "title": "Contains the code used in the HBase: The Definitive Guide book.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/oliverhampton/Breakpoint-Primer-Design",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    5
                ]
            ]
        },
        "title": "Ruby scripts to generate breakpoint spanning primers for aberrant fusion PCR validation.  These scripts will generate Primer3 input sequences across two distinct genome annotations (in .lff format) . Primer3 is executed, results parsed, and subjected to InsilicoPCR to ensure that no amplicon is produced when applied to the normal genome.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jstjohn/simseq",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    24
                ]
            ]
        },
        "title": "An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/marcusps/TransPauli",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    3
                ]
            ]
        },
        "title": "A Python script for tracking the evolution of Pauli observables under Clifford transformation.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brownie/cashlib",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    24
                ]
            ]
        },
        "title": "ZKPDL & cashlib: A language-based system for zero-knowledge proofs and electronic cash (e-cash). ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ykulbak/ihbase",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    16
                ]
            ]
        },
        "title": "Indexed HBase. An extnestion of HBASE core which support faster scans at the expense of larger RAM consumption.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/specht/gpf",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    21
                ]
            ]
        },
        "title": "Genomic Peptide Finder",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/maximedenes/native-coq",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    2
                ]
            ]
        },
        "title": "Coq with native compilation, as well as machine integers and arrays !",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tansey/social-learning",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    5
                ]
            ]
        },
        "title": "A demonstration of social learning applied in neuroevolution",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/duvenaud/warped-mixtures",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    7
                ]
            ]
        },
        "title": "Code for density estimation with nonparametric cluster shapes.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PrimaryFeather/Starling-Framework",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    24
                ]
            ]
        },
        "title": "The GPU powered 2D Flash API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mgaertne/airport",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    28
                ]
            ]
        },
        "title": "Parking Lot calculator examples for ATDD by Example",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeetsukumaran/Ginkgo",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    21
                ]
            ]
        },
        "title": "Forward-time spatially-explicit agent-based simulations of phylogeographic history over dynamic landscapes and environments.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bbcoimbra/compiler",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    6
                ]
            ]
        },
        "title": "PoC for my degree thesis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/marionlb/JLM",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    23
                ]
            ]
        },
        "title": "Java Learning Machine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brasiliana/corisco",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    10
                ]
            ]
        },
        "title": "Corisco Platform for DSpace",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/noelg/symfony-demo",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    17
                ]
            ]
        },
        "title": "A shopping cart application built with Symfony 2",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jonclayden/tractor",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    5
                ]
            ]
        },
        "title": "Magnetic resonance imaging and tractography with R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/coreyflynn/GeneExpressMap",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    20
                ]
            ]
        },
        "title": "GeneExpressMap makes possible the rapid, three-dimensional analysis of multiplex fluorescent whole mount in situ hybridizartion (F-WMISH) data at single cell resolution. It relies on the assignment of F-WMISH signal to individual cells based on the proximity of cytoplasmic hybridization signal to cell nuclei. GeneExpress3D greatly extends the power of multiplex F-WMISH for analyzing patterns of gene expression and is a powerful tool for gene regulatory network analysis.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jfinkels/equivalence",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    26
                ]
            ]
        },
        "title": "On the computational complexity of equivalence relations under kernel reductions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nje/jquery-tmpl",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    8
                ]
            ]
        },
        "title": "A templating plugin for jQuery.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/graydon/rust",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    11
                ]
            ]
        },
        "title": "Graydon's wip repo for rust, not the main repo. See mozilla/rust instead.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/micho/riverrun",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    7
                ]
            ]
        },
        "title": "A collective creation experiment",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aleifer/dissertation",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    29
                ]
            ]
        },
        "title": "Andrew Leifer's Harvard Dissertation 2011",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pdav/netmagis",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    25
                ]
            ]
        },
        "title": "Network Management Information System",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RobertOrmandi/Gossip-Learning-Framework",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    25
                ]
            ]
        },
        "title": "This open source benchmarking framework allows you to build your own P2P learning algorithm and evaluate it in a simulated but realistic -- where you can model message delay, drop or churn -- networked environment. Moreover it contains the prototype implementations of some well-known machine learning algorithms like SVM and Logistic Regression.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mbklein/availability-server",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    5
                ]
            ]
        },
        "title": "Thin availability layer for OSU Library's OPAC",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hugobr/should-dsl",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    13
                ]
            ]
        },
        "title": "Should-DSL: Improve readability for should-style expectations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ChrisSalij/PageAnalyzer",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    17
                ]
            ]
        },
        "title": "The code for my Summer Research Internship at ODCSSS.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/d2rq/d2rq",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    3
                ]
            ]
        },
        "title": "Database to RDF mapping engine and SPARQL server",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bryanhanson/ChemoSpec",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    15
                ]
            ]
        },
        "title": "R functions for the chemometric analysis of spectra",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/VGraupera/PhoneGap-Contacts-Sample",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    13
                ]
            ]
        },
        "title": "sample for upcoming book",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/northern-bites/nao-man",
        "issued": {
            "date-parts": [
                [
                    2008,
                    7,
                    24
                ]
            ]
        },
        "title": "The Northern Bites' code base for RoboCup soccer competition on the Aldebaran Nao, Standard Platform League",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nst/spyphone",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    2
                ]
            ]
        },
        "title": "This project shows the kind of data a rogue iPhone application can collect.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/colder/phantm",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    4
                ]
            ]
        },
        "title": "Static analysis using data-flow and type inference for PHP applications - Implemented in Scala",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dankamongmen/wdp",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    18
                ]
            ]
        },
        "title": "LaTeX etc sources for various papers and writeups from GT MSCS, spring 2010 semester",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gertvv/xpplan",
        "issued": {
            "date-parts": [
                [
                    2009,
                    11,
                    27
                ]
            ]
        },
        "title": "XP planning using integer programming",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mikejs/gridfs-fuse",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    19
                ]
            ]
        },
        "title": "A FUSE wrapper around MongoDB's GridFS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lucmoreau/OpenProvenanceModel",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    20
                ]
            ]
        },
        "title": "The overarching project of Java code related to the Open Provenance specifications.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tonyg/rabbithub",
        "issued": {
            "date-parts": [
                [
                    2009,
                    6,
                    2
                ]
            ]
        },
        "title": "Experimental RabbitMQ PubSubHubBub interface",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bwallace/copd_db",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    7
                ]
            ]
        },
        "title": "open source application for real-time meta-analyses of genetic data pertaining to copd, in python and R.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cbguder/aes-on-cuda",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    13
                ]
            ]
        },
        "title": "AES on CUDA",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sydb/TEI-in-Libraries",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    11
                ]
            ]
        },
        "title": "Joint DLF TEI task force and TEI in Libraries SIG work space",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/caelum/rest-client",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    13
                ]
            ]
        },
        "title": "Um client rest para web.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alexy/tfitter",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    20
                ]
            ]
        },
        "title": "tfitter crawler",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/robtweed/node-mdbm",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    2
                ]
            ]
        },
        "title": "node.js client for Global-based NoSQL database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simplegeo/python-oauth2",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    21
                ]
            ]
        },
        "title": "A fully tested, abstract interface to creating OAuth clients and servers.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/svenfuchs/rails-i18n",
        "issued": {
            "date-parts": [
                [
                    2008,
                    7,
                    31
                ]
            ]
        },
        "title": "Repository for collecting Locale data for Ruby on Rails I18n as well as other interesting, Rails related I18n stuff",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matthewbot/cbc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    27
                ]
            ]
        },
        "title": "CBC Botball Controller",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chemhack/jsmoleditor",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    21
                ]
            ]
        },
        "title": "JavaScript based molecule structure editor",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nmatzke/biopython",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    2
                ]
            ]
        },
        "title": "Nick Matzke's git mirror of the Biopython CVS repository, for GSoC 2009 project: BioGeography module for biopython",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/appcelerator/KitchenSink",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    26
                ]
            ]
        },
        "title": "Titanium Mobile Kitchen Sink Demo",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cboettig/Comparative-Phylogenetics",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    14
                ]
            ]
        },
        "title": "Research and Methods Development in Comparative Phylogenetics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/antoniogarrote/semantic_rest",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    12
                ]
            ]
        },
        "title": "toolkit for the creation of semantic restful web services",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jquery/jquery",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    3
                ]
            ]
        },
        "title": "jQuery JavaScript Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cumorc/cumorc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    27
                ]
            ]
        },
        "title": "CUDA Multiclass Object Recognition",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/projectblacklight/blacklight",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    30
                ]
            ]
        },
        "title": "Blacklight provides a discovery interface for any Solr (http://lucene.apache.org/solr) index.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/singpolyma/mnemonicode",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    27
                ]
            ]
        },
        "title": "Fork of http://tothink.com/mnemonic/",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DAddYE/web-frameworks-benchmark",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    6
                ]
            ]
        },
        "title": "Padrino, Merb, Rails3, Sinatra and ramaze benchmark",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rhz/conan",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    18
                ]
            ]
        },
        "title": "C++/Python library for the generation, inference and analysis of complex networks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GreenGroup/RMG-Java",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    25
                ]
            ]
        },
        "title": "The Java version of RMG: Reaction Mechanism Generator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/EladElrom/eladlib",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    28
                ]
            ]
        },
        "title": "This collection is Elad Elrom's private library of Adobe Action Script 3.0 APIs for Adobe Flex and AIR. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeroenh/Pynt",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    11
                ]
            ]
        },
        "title": "Python NDL Toolkit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chanwit/jdyn",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    15
                ]
            ]
        },
        "title": "Invokedynamic Related Stuff",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Manticore/beclab",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    17
                ]
            ]
        },
        "title": "A rewrite of the original beclab.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arrayexpress/ae-interface",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    3
                ]
            ]
        },
        "title": "ArrayExpress Archive Web Interface",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/inet-framework/inet",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    22
                ]
            ]
        },
        "title": "INET framework for the OMNeT++ discrete event simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/singingfish/Text-TranscriptMiner",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    14
                ]
            ]
        },
        "title": "Libraries for managing and analyzing qualitative data, text transcripts of audio and video mainly.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/singingfish/Text-TranscriptMiner-Web",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    29
                ]
            ]
        },
        "title": "Web front end for Text::TranscriptMiner",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tibbe/event",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    28
                ]
            ]
        },
        "title": "A Haskell event notification library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/paradigmatic/CxALite",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    1
                ]
            ]
        },
        "title": "Lightweight middleware for coupling multi-scale and multi-science models.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kbak/lkc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    29
                ]
            ]
        },
        "title": "The project aims at improving usability of the Linux kernel configuration tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/memcached/memcached",
        "issued": {
            "date-parts": [
                [
                    2009,
                    4,
                    24
                ]
            ]
        },
        "title": "memcached development tree",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wjwwood/au-proteus",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    12
                ]
            ]
        },
        "title": "Auburn University Proteus Project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/christian/Rho",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    6
                ]
            ]
        },
        "title": "Recommender Engine using Matrix Factorization",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/haqu/tweejump",
        "issued": {
            "date-parts": [
                [
                    2009,
                    5,
                    1
                ]
            ]
        },
        "title": "iPhone game",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/joshsh/laboratory",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    15
                ]
            ]
        },
        "title": "A space for small or experimental projects.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nibrahim/Devious-machinations",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    2
                ]
            ]
        },
        "title": "A repository to store the project I'm creating for APAC Pycon. A clone of a subset of Jeff Tunnel's TIM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jkooker/VirtualConductor",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    18
                ]
            ]
        },
        "title": "UCSD ECE 285 Project: Demonstration of Head Tracking and Gesture Recognition, With 3D Audio",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jschementi/ironrubymvc",
        "issued": {
            "date-parts": [
                [
                    2008,
                    10,
                    24
                ]
            ]
        },
        "title": "Write ASP.NET MVC application in Ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/drewbourne/hamcrest-as3",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    18
                ]
            ]
        },
        "title": "Port of hamcrest to ActionScript 3,  a library of matcher objects (also known as constraints or predicates) allowing 'match' rules to be defined declaratively, to be used in other frameworks. Typical scenarios include testing frameworks, mocking libraries and UI validation rules.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kstone/LEVEL",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    8
                ]
            ]
        },
        "title": "LEVEL: Listening To Everyone’s Voice Enhances Learning",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pboothe/Lispy-Animator",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    23
                ]
            ]
        },
        "title": "Drawing Trees and Animating Tree Changes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/adriaanm/scala",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    1
                ]
            ]
        },
        "title": "The Scala programming language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/markbates/cover_me",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    13
                ]
            ]
        },
        "title": "An RCov-esque coverage tool for Ruby 1.9",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hampos/DeciBell",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    2
                ]
            ]
        },
        "title": "DeciBell is an Object - Relation database mapper for Java",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Kaelig/Project-Starter",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    23
                ]
            ]
        },
        "title": "DEPRECATED, DO NOT USE — File tree, css and jquery for html ready projects",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ornediaz/wsnpy",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    11
                ]
            ]
        },
        "title": "Python simulator of a wireless sensor network",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gawbul/gcat",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    30
                ]
            ]
        },
        "title": "Genome Comparison and Analysis Toolkit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ckaestne/TypeChef",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    1
                ]
            ]
        },
        "title": "Type checking ifdef variability",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mark-watson/java_practical_semantic_web",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    25
                ]
            ]
        },
        "title": "Code examples for my book \"Practical Semantic Web Programming (Java, Scala, Clojure, and JRuby Edition)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/njbartlett/Extensions2Services",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    20
                ]
            ]
        },
        "title": "Integration layer for Eclipse Extensions to use OSGi Services",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sinelaw/graphui",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    14
                ]
            ]
        },
        "title": "A visual graph editor, with automatic layout",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/batterseapower/supercompilation-by-evaluation",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    5
                ]
            ]
        },
        "title": "Supercompilation by Evaluation: archived for posterity. See http://github.com/batterseapower/chsc for the latest developments.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dorchard/ypnos",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    2
                ]
            ]
        },
        "title": "EDSL for Stencil Computations in Haskell",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gjherbiet/sharc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    26
                ]
            ]
        },
        "title": "Sharper Heuristic for Assignment of Robust Communities",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davebryson/beepbeep",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    12
                ]
            ]
        },
        "title": "BeepBeep is a simple web application framework for Mochiweb inspired by Rails and Merb",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ezod/adolphus",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    23
                ]
            ]
        },
        "title": "Multi-camera system coverage modeling suite.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mit-carbon/flat-combining",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    13
                ]
            ]
        },
        "title": "Traditional data-structure designs, whether lock-based or lock-free, provide parallelism via fine grained synchronization among threads. Flat Combining is a new, efficient synchronization paradigm based on coarse locking.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/malaria-atlas-project/mbg-world",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    4
                ]
            ]
        },
        "title": "MAP's P. falciparum cartography code",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/deeplearningais/CUV",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    20
                ]
            ]
        },
        "title": "Matrix library for CUDA in C++ and Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sebastiaanvisser/islay",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    24
                ]
            ]
        },
        "title": "A generic approach to datatype persistency in Haskell.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sebastiaanvisser/msc-thesis",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    13
                ]
            ]
        },
        "title": "MSc Thesis project Utrecht University + wgp10 paper.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jepst/CloudHaskell",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    14
                ]
            ]
        },
        "title": "A distributed computing framework for Haskell",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mobility-fw/mf-opp4",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    10
                ]
            ]
        },
        "title": "Mobility Framework for OMNeT++ 4",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rennhak/keyposes",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    5
                ]
            ]
        },
        "title": "Keyposes is a software which extracts certain \"Key motions\" from input streams which classify as \"Keyposes\".",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cgueret/LinkedData-QA",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    19
                ]
            ]
        },
        "title": "Playing around analysis of Linked Data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LATC/24-7-platform",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    18
                ]
            ]
        },
        "title": "24/7 Interlinking Platform",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/basho/rebar",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    16
                ]
            ]
        },
        "title": "ATTENTION: Please find the canonical repository here: ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jebstuart/researchtools",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    25
                ]
            ]
        },
        "title": "Random scripts made for my research",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bwlewis/R-Websockets",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    1
                ]
            ]
        },
        "title": "HTML 5 Websockets implementation for R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/micknoise/Maximilian",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    23
                ]
            ]
        },
        "title": "C++ Audio and Music DSP Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/themattharris/tmhOAuth",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    26
                ]
            ]
        },
        "title": "An OAuth 1.0A library written in PHP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/teleyinex/jarifa",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    9
                ]
            ]
        },
        "title": "Jarifa (a.k.a OGM) is a system for grid computing on organizational resources, using BOINC.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zivy/LSQRRecipes",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    24
                ]
            ]
        },
        "title": "Least Squares Recipes for Parameter Estimation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cgueret/SemanticXO",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    16
                ]
            ]
        },
        "title": "Project about adding Semantic Web tools into the XO laptop",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tbehailu/MIPS-Simulator",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    11
                ]
            ]
        },
        "title": "MIPS Instruction Set Emulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bwhite/hadoopy",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    18
                ]
            ]
        },
        "title": "Python MapReduce library written in Cython. Visit us in #hadoopy on freenode.  See the link below for documentation and tutorials.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/klbostee/dumbo",
        "issued": {
            "date-parts": [
                [
                    2008,
                    6,
                    14
                ]
            ]
        },
        "title": "Python module that allows one to easily write and run Hadoop programs.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mono/monotouch-bindings",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    1
                ]
            ]
        },
        "title": "A collection of third party bindings for MonoTouch",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/whilethis/Super-Checkout",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    13
                ]
            ]
        },
        "title": "The initial project from the book \"Pro iOS 5 Tools\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/capistrano/capistrano",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    26
                ]
            ]
        },
        "title": "Remote multi-server automation tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bholley/maul",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    19
                ]
            ]
        },
        "title": "A Machine Learning approach to User-Agent parsing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dnewcome/jstle",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    24
                ]
            ]
        },
        "title": "Jstle is a terse javascript  RDF serialization language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/webr3/js3",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    19
                ]
            ]
        },
        "title": "An insane integration of RDF in to ECMAScript-262 V5 (Javascript)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CardinalPath/gas",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    25
                ]
            ]
        },
        "title": "Google Analytics on Steroids. A Google Analytics implementation with more power features.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jayunit100/RudolF",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    26
                ]
            ]
        },
        "title": "(inactive and unmaintained) A set of loosely coupled machine learning, data-mining and bioinformatics applications in a broad range of functional languages.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/josephwright/biblatex-nature",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    25
                ]
            ]
        },
        "title": "A biblatex implementation of the Nature bibliography style",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/WinVector/Locality-Sensitive-Hashing-Example",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    23
                ]
            ]
        },
        "title": "Simple example of Locality Sensitive Hashing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/diwi/dLibs",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    21
                ]
            ]
        },
        "title": "processing/java - kinect library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shiffman/libfreenect",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    17
                ]
            ]
        },
        "title": "Just working on Processing library here",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DataMap13/DataMap",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    17
                ]
            ]
        },
        "title": "DataMap Senior Design Project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kyleroche/Professional_iOS_AugmentedReality",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    22
                ]
            ]
        },
        "title": "Professional iOS Augmented Reality book (Apress). Code samples",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ideashower/sharekit",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    6
                ]
            ]
        },
        "title": "Drop in sharing features for all iPhone and iPad apps",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CoreMedia/jangaroo-tools",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    21
                ]
            ]
        },
        "title": "AS3 w/o Flash Plugin",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/spad12/GPU_Nubeam",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    4
                ]
            ]
        },
        "title": "GPU Port of NUBEAM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CBCJVM/python-pathfinding",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    9
                ]
            ]
        },
        "title": "A pathfinding system, currently written in Jython compatible Python, with a goal to eventually be ported to Java and integrated with CBCJVM.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jhammond/lltop",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    19
                ]
            ]
        },
        "title": "Lustre load monitor with batch scheduler integration",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/prefuse/Flare",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    4
                ]
            ]
        },
        "title": "Flare is an ActionScript library for creating visualizations that run in the Adobe Flash Player. From basic charts and graphs to complex interactive graphics, the toolkit supports data management, visual encoding, animation, and interaction techniques. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/josephwright/biblatex-ieee",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    26
                ]
            ]
        },
        "title": "A biblatex implementation of the IEEE bibliography style",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/facebook/facebook-ios-sdk",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    24
                ]
            ]
        },
        "title": "Use the Facebook SDK for iOS to integrate with Facebook, help build engaging social apps, and get more installs.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Gurpartap/GSTwitPicEngine",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    29
                ]
            ]
        },
        "title": "Objective C wrapper around TwitPic's OAuth and OAuth Echo API with OAuthConsumer Lib. Deprecated.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JuliaLang/julia",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    21
                ]
            ]
        },
        "title": "The Julia Language: A fresh approach to technical computing.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/puppetlabs/puppet",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    14
                ]
            ]
        },
        "title": "Server automation framework and application",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lucapinello/mim",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    26
                ]
            ]
        },
        "title": "Motif Independent Metric",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tatemae/capret",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    22
                ]
            ]
        },
        "title": "Analytics for OER",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/macmade/OpenCV-iOS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    2
                ]
            ]
        },
        "title": "OpenCV (Open Source Computer Vision) is a library of programming functions for real time computer vision. This project is a port of the OpenCV library for Apple iOS. It includes two XCode projects: one for iPhone, the other one for iPad.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/phaedon/ohiio",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    25
                ]
            ]
        },
        "title": "Haskell binding to the OpenImageIO library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/devinross/tapkulibrary",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    3
                ]
            ]
        },
        "title": "tap + haiku = tapku, a well crafted open source iOS framework",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/packetlss/android-locdump",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    21
                ]
            ]
        },
        "title": "android location service cache dumper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gowalla/AFNetworking",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    11
                ]
            ]
        },
        "title": "AFNetworking Has a New Home: https://github.com/AFNetworking/AFNetworking",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mongodb/mongo-snippets",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    10
                ]
            ]
        },
        "title": "snippets of code that might be useful",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bmeurer/ocaml-experimental",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    18
                ]
            ]
        },
        "title": "Various experimental changes to OCaml.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bmeurer/ocamljit2",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    15
                ]
            ]
        },
        "title": "Just-In-Time compiler for the OCaml byte-code runtime.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/maylson/Waveit-Web-Player",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    11
                ]
            ]
        },
        "title": "A web player for Ogre3D.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/westonruter/webforms2",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    7
                ]
            ]
        },
        "title": "Web Forms 2.0 Cross-Browser Implementation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wangd/SciDB-HDF5",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    18
                ]
            ]
        },
        "title": "A basic loader of HDF5 files into SciDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jronallo/mead",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    10
                ]
            ]
        },
        "title": "Metadata from Encoded Archival Description",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jedbrown/dohp",
        "issued": {
            "date-parts": [
                [
                    2008,
                    8,
                    28
                ]
            ]
        },
        "title": "dual order hp finite element",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sbadia/gdeploy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    28
                ]
            ]
        },
        "title": "Deploy gLite on Grid'5000",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jnraber/Hades",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    25
                ]
            ]
        },
        "title": "Windows driver for profiling and debugging ring 3 applications",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kaler/CrashKit",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    11
                ]
            ]
        },
        "title": "CrashKit catches uncaught exceptions, traps signals, and sends them to developers by email or straight to your bug database.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davidmeyer/lig",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    7
                ]
            ]
        },
        "title": "lig is a tool that  can be used to query the LISP mapping database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sidelab/prowebapps-code",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    23
                ]
            ]
        },
        "title": "Code Samples from the Pro Android Web Apps Apress Book",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/astraw/stdeb",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    29
                ]
            ]
        },
        "title": "produces Debian source packages from Python packages (see README.rst for full documentation)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/benthor/remotty",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    19
                ]
            ]
        },
        "title": "Expose a PTTY to file descriptors/sockets to provide network-agnostik rsh/rlogin functionality. Use case: CurveCP remote shell.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/benthor/stdxput2dev",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    4
                ]
            ]
        },
        "title": "create a linux tunnel device forwarding to and from stdout and stdin",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kdudka/predator",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    31
                ]
            ]
        },
        "title": "A Separation Logic-Based GCC Plug-in for Checking Manipulation of Dynamic Data Structures",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/miksago/node-websocket-server",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    12
                ]
            ]
        },
        "title": "[DEPRECATED] A WebSocket server written in low-level node.js, should be 90-100% spec compatible.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tepperly/MixDown",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    1
                ]
            ]
        },
        "title": "Meta-build tool for managing collections of third-party libraries",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/puppetlabs/mcollective-plugins",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    25
                ]
            ]
        },
        "title": "Marionette Collective Plugins",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/abraham/twitteroauth",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    14
                ]
            ]
        },
        "title": "The first PHP Library to support OAuth for Twitter's REST API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zac/iphonearkit",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    8
                ]
            ]
        },
        "title": "An Objective-C augmented reality kit for iPhone.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/childebr/MassStruct",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    20
                ]
            ]
        },
        "title": "This repository contains the source files to the MassStruct approach.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/yihui/Rd2roxygen",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    27
                ]
            ]
        },
        "title": "Convert Rd to roxygen documentation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Salaboy/emergency-service-drools-app",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    23
                ]
            ]
        },
        "title": "Emergency Service Drools Application",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sbadame/Memeograph",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    27
                ]
            ]
        },
        "title": "A Java debugger that will create memory graphs of a running java program",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mortenthansen/tinyos",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    29
                ]
            ]
        },
        "title": "Morten's Public TinyOS Tree",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andrei-lihu/Eva2-AL",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    9
                ]
            ]
        },
        "title": "A fork of Java EvA2 from the University of Tuebingen. This variant has disagreements for PSO and genetic algorithms.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matsusato3/4rd-spec-repo",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    11
                ]
            ]
        },
        "title": "4rd protocol spec document repository for the 4rd design team",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/spacelis/tcrawl",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    2
                ]
            ]
        },
        "title": "A crawler for App APIs of any kinds",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/puppetlabs/puppet-module-tool",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    18
                ]
            ]
        },
        "title": "DEPRECATED: the tool has been moved into core as of Puppet 2.7.12 and will no longer be maintained here. Raise bugs for the new tool in the project below under the category 'module tool'.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cloudera/sqoop",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    27
                ]
            ]
        },
        "title": "Sqoop has moved to Apache!",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tnine/Datanucleus-Cassandra-Plugin",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    6
                ]
            ]
        },
        "title": "A plugin for datanucleus and cassandra",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/petedoyle/android-support-v4-googlemaps",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    8
                ]
            ]
        },
        "title": "A port of the Android Compatibility package which makes FragmentActivity extend MapActivity.  This is a hack to make it possible to use a MapView in a Fragment.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/UNC-Libraries/Curators-Workbench",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    7
                ]
            ]
        },
        "title": "The Curator's Workbench is an extensible digital collection and appraisal tool for the desktop.  It is designed to acquire and process batch data efficiently while giving the user control over work flow.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Lythimus/PARSES",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    23
                ]
            ]
        },
        "title": "PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences, is a pipeline constructed from existing sequence analysis tools that allows the user to interrogate RNA-Sequencing experiments for possible biological contamination or the presence of exogenous sequences that may shed light on other factors influencing an organism's condition. Built upon Rake, PARSES allows data simple analysis of RNA-Sequencing data in an automated and repeatable fashion. Usability, logging, and versatility are the keynotes of this pipeline.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/csmiller/EMIRGE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    21
                ]
            ]
        },
        "title": "EMIRGE reconstructs full length ribosomal genes from short read sequencing data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/semantic-im/sim-server",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    4
                ]
            ]
        },
        "title": "Semantic Instrumentation and Monitoring - Server Module",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nickstenning/annotator",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    19
                ]
            ]
        },
        "title": "READ ME: Please see okfn's fork, which is now the primary development fork.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/antelopeusersgroup/antelope_contrib",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    8
                ]
            ]
        },
        "title": "Contributed code for the Antelope Environmental Monitoring System from BRTT, Inc. (http://www.brtt.com)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jhbadger/Newick-ruby",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    17
                ]
            ]
        },
        "title": "Routines for manipulating Newick Format phylogenetic trees in Ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mmbell/Airborne-Radar-QC",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    7
                ]
            ]
        },
        "title": "Quality control for airborne tail Doppler radar",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/facebook/facebook-android-sdk",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    10
                ]
            ]
        },
        "title": "Use the Facebook SDK for Android to integrate with Facebook, help build engaging social apps, and get more installs.aging social apps, and get more users.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alexis-roche/variational_sampler",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    5
                ]
            ]
        },
        "title": "A python package that implements Gaussian approximation of multivariate distributions using variational sampling (intended to supersede scikits.infer).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sestoft/C5",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    15
                ]
            ]
        },
        "title": "C5 generic collection library for C#/.NET",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/github/gollum",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    4
                ]
            ]
        },
        "title": "Unsupported — use https://github.com/gollum/gollum!",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sharpton/PhylOTU",
        "issued": {
            "date-parts": [
                [
                    2010,
                    9,
                    7
                ]
            ]
        },
        "title": "PhylOTU identifies microbial OTUs from metagenomic data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fletcher/peg-multimarkdown",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    11
                ]
            ]
        },
        "title": "An implementation of MultiMarkdown in C, using a PEG grammar - a fork of jgm's peg-markdown. No longer under active development - see MMD 4.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mzsanford/twitter-text-rb",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    16
                ]
            ]
        },
        "title": "The canonical version of this library can now be found at @twitter/twitter-text-rb",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/schoeberl/leros",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    20
                ]
            ]
        },
        "title": "A Tiny Processor Core",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kmarkus/rFSM",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    1
                ]
            ]
        },
        "title": "rFSM is a lightweight Statechart implementation in Lua",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rocky/remake",
        "issued": {
            "date-parts": [
                [
                    2008,
                    10,
                    21
                ]
            ]
        },
        "title": "GNU Make debugger",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/logang/neuroparser",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    5
                ]
            ]
        },
        "title": "Sparse and structured methods for supervised and unsupervised learning on large neuroimaging data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mzajac/FSCB",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    28
                ]
            ]
        },
        "title": "font-sensitive corpus builder",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alcortes-uc3m/netqos",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    8
                ]
            ]
        },
        "title": "Synthetic File System to Publish NIC Selection Criteria on Multihomed Devices",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/allenwb/jsmirrors",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    21
                ]
            ]
        },
        "title": "A prototype mirrors-based refection system for JavaScript",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ProjectCCNx/ccnx",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    17
                ]
            ]
        },
        "title": "Content Centric Networking (CCNx) - Project CCNx™ is an open source project exploring the next step in networking, based on one fundamental architectural change: replacing named hosts with named content as the primary abstraction.  ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zblair/QSimpleTickerGraph",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    12
                ]
            ]
        },
        "title": "A very simple ticker graph widget, similar to the widget used for \"CPU Usage History\" in the Windows Task Manager.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sorccu/cufon",
        "issued": {
            "date-parts": [
                [
                    2008,
                    11,
                    4
                ]
            ]
        },
        "title": "Fast text replacement with canvas and VML - no Flash or images required.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/akisaarinen/smartdiet",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    2
                ]
            ]
        },
        "title": "SmartDiet analysis toolkit for Android",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/borismus/crowdforge",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    1
                ]
            ]
        },
        "title": "Django framework for crowdsourcing complex tasks using MTurk",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/EthanHeilman/MD6_diffp",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    21
                ]
            ]
        },
        "title": "./diffp -- Differential Pattern Search Program for MD6. This software is used to reestablish the differential resistance of MD6. It uses a classification system of differential weight patterns that allows us to extend previous analysis to prove that MD6 is resistant to differential cryptanalysis. Our analysis allows us to more than double the security margin of MD6 against differential attacks. See Restoring the Differential Resistance of MD6 (http://eprint.iacr.org/2011/374).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/diva/diva-distribution",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    2
                ]
            ]
        },
        "title": "OpenSim + addons. This is the content that gets distributed in the d2 project.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/unboxed/icuke",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    21
                ]
            ]
        },
        "title": "Integration testing for iPhone applications with Cucumber",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chb/smart_sample_patients",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    24
                ]
            ]
        },
        "title": "Utilities to generate sample data as SMArt RDF",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/behas/ese2edm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    3
                ]
            ]
        },
        "title": "A collection of ruby scripts that should make Europeana Linked-Data ready",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/couchbase/geocouch",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    3
                ]
            ]
        },
        "title": "GeoCouch, a spatial index for CouchDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bhaibeka/predictionet",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    1
                ]
            ]
        },
        "title": "This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the latter may infer network with hundreds of variables. Several statistics at the edge and node levels have been implemented (edge stability, predictive ability of each node, ...) in order to help the user to focus on high quality subnetworks. Ultimately, this package is used in the 'Predictive Networks' web application developed by the Dana-Farber Cancer Institute in collaboration with Entagen",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mobilesensing-usc/MovementTrackr",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    22
                ]
            ]
        },
        "title": "Records accelerometer, gyroscope and GPS data and displays the data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Machx/Xcode-Keyboard-Shortcuts",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    10
                ]
            ]
        },
        "title": "A Git Repo for storing the Xcode Keyboard Shortcuts as well as being able to keep track of forks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/samuraraujo/SERIMI-RDF-Interlinking",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    22
                ]
            ]
        },
        "title": "SERIMI approach for RDF Interlinking",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ginatrapani/ThinkUp",
        "issued": {
            "date-parts": [
                [
                    2009,
                    6,
                    6
                ]
            ]
        },
        "title": "ThinkUp gives you insights into your social networking activity on Twitter, Facebook, Foursquare, Google+, and beyond.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mleibman/SlickGrid",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    17
                ]
            ]
        },
        "title": "A lightning fast JavaScript grid/spreadsheet",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JosuaKrause/Bubble-Sets",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    19
                ]
            ]
        },
        "title": "An implementation of bubble sets without the use of external libraries.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ilya-klyuchnikov/mrsc",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    23
                ]
            ]
        },
        "title": "A toolkit for building multi-result supercompilers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Sohl-Dickstein/Minimum-Probability-Flow-Learning",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    27
                ]
            ]
        },
        "title": "Matlab code implementing Minimum Probability Flow Learning.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tjake/Solandra",
        "issued": {
            "date-parts": [
                [
                    2009,
                    10,
                    5
                ]
            ]
        },
        "title": "Solandra = Solr + Cassandra",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/erikor/Imagine",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    7
                ]
            ]
        },
        "title": "Interactive 2D image analysis.  It is extensible through plugins.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/felixb/websms",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    29
                ]
            ]
        },
        "title": "WebSMS is an Android application. It sends free or cheap SMS via some webservices",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rdelbru/trec-entity-tool",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    28
                ]
            ]
        },
        "title": "Tool for TREC Entity Track Dataset",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rsanheim/brain_buster",
        "issued": {
            "date-parts": [
                [
                    2008,
                    2,
                    12
                ]
            ]
        },
        "title": "BrainBuster - a logic captcha for Rails",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nassar/amberfish",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    18
                ]
            ]
        },
        "title": "Text retrieval software",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mbask/treecm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    2
                ]
            ]
        },
        "title": "A R package to compute centre of mass of trees ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/paulomach/TG-II",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    17
                ]
            ]
        },
        "title": "2nd Graduation Work source code",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brownan/Reed-Solomon",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    5
                ]
            ]
        },
        "title": "Proof of concept on how to implement the Reed Solomon class of error correcting codes in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/emepyc/NGSfy",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    10
                ]
            ]
        },
        "title": "Introduce next generation sequencing (NGS) errors in DNA sequences",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/caxqueiroz/scadasim",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    23
                ]
            ]
        },
        "title": "Simulations for SCADA systems",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nicksieger/jruby-rack",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    6
                ]
            ]
        },
        "title": "Rack for JRuby and Java appservers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/southworks/protocol-bridge-claims-provider",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    31
                ]
            ]
        },
        "title": "An implementation of a bridge that talks WS-Federation and SAML tokens on one side and OpenID, OAuth or any other protocol on the identity provider side using Windows Identity Foundation. This code as-is provided under the Ms-PL license http://www.opensource.org/licenses/ms-pl.html",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pmundkur/odisco",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    27
                ]
            ]
        },
        "title": "Library for implementing Disco jobs in ocaml.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/binarylogic/authlogic",
        "issued": {
            "date-parts": [
                [
                    2008,
                    10,
                    24
                ]
            ]
        },
        "title": "A simple ruby authentication solution.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zk00006/OpenTLD",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    6
                ]
            ]
        },
        "title": "Official source code for TLD",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RikV/fedora-checksum",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    28
                ]
            ]
        },
        "title": "A Perl script using REST to iterate through the objects and datastreams in your repository to check the validity of the content against their checksums. Feel free to mail me any feedback or suggestion !!!",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matter2media/crowdnet",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    18
                ]
            ]
        },
        "title": "Infrastructure for mesh Mobs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/montferrat/MediationLayer---LOP2P-Network",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    20
                ]
            ]
        },
        "title": "Mediation Layer enables the communication between Learning Institutions and the LOP2P Network for Open Educationa Resources sharing.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/reines/persistenthashmap",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    14
                ]
            ]
        },
        "title": "A disk-based HashMap implementation allowing persistence of data across sessions.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dmolina/ssgatests",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    4
                ]
            ]
        },
        "title": "Example of using BDD to test a non-deterministic steady-state genetic algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/luminousfennell/monopoly",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    6
                ]
            ]
        },
        "title": "Example development for lecture",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zeromq/pyzmq",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    21
                ]
            ]
        },
        "title": "PyZMQ:  Python bindings for zeromq",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ipython/ipython",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    10
                ]
            ]
        },
        "title": "Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tetue/lucidasimple",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    16
                ]
            ]
        },
        "title": "Rustine CSS expérimentale pour simplifier l'usage de l'espace privé de SPIP3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/creationix/step",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    6
                ]
            ]
        },
        "title": "An async control-flow library that makes stepping through logic easy.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tgamblin/wrap",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    5
                ]
            ]
        },
        "title": "MPI Wrapper Generator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/powertac/powertac-server",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    19
                ]
            ]
        },
        "title": "Power TAC simulation server",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vmx/couchdb",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    30
                ]
            ]
        },
        "title": "Mirror of Apache CouchDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kamermans/WALL4PHP-by-Tera-WURFL",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    2
                ]
            ]
        },
        "title": "A fork of the WALL4PHP library that is maintained by the Tera-WURFL staff",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jelsas/django-assessment",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    19
                ]
            ]
        },
        "title": "Relevance Assessment app for Django",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/inetmanet/inetmanet",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    11
                ]
            ]
        },
        "title": "INET with mobile/ad-hoc prototocols",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pfisterer/fabric",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    11
                ]
            ]
        },
        "title": "Fabric: A framework for code generation for resource-constraint devices based on XML Schema/WSDL. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jpatanooga/KnittingBoar",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    7
                ]
            ]
        },
        "title": "Parallel Iterative Algorithm (SGD) on Hadoop's YARN framework",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/staliv/GeneModifier",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    22
                ]
            ]
        },
        "title": "Modifies a gene to include common benign variants.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rplnt/abrt",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    31
                ]
            ]
        },
        "title": "abrt with api",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/frigaut/yao",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    15
                ]
            ]
        },
        "title": "An adaptive optics simulation package. Yao is a yorick plugin. Many of the core routines are written in C, which makes it very fast.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JUrban/MMLLicense",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    11
                ]
            ]
        },
        "title": "Licensing for the Mizar Mathematical Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brianfrankcooper/YCSB",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    19
                ]
            ]
        },
        "title": "Yahoo! Cloud Serving Benchmark",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/maksim2042/SNABook",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    19
                ]
            ]
        },
        "title": "Code for \"Social Networks for Startups\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/yrosseel/lavaan",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    27
                ]
            ]
        },
        "title": "an R package for structural equation modeling and more",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/carneades/carneades",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    12
                ]
            ]
        },
        "title": "Carneades is an argument mapping and evaluation application, with a graphical user interface, and a software library for building applications supporting various argumentation tasks.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vafa/xepersian",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    28
                ]
            ]
        },
        "title": "Persian for LaTeX, using XeTeX engine",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/digitalreasoning/PyStratus",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    4
                ]
            ]
        },
        "title": "Python-based utility for managing various distributed services on cloud providers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ot/semi_index",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    30
                ]
            ]
        },
        "title": "Implementation of the JSON semi-index described in the paper \"Semi-Indexing Semi-Structured Data in Tiny Space\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/emcardoso/CTi",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    10
                ]
            ]
        },
        "title": "Implementação do sistema da dissertacao",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/baggers/JavaPatterns",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    11
                ]
            ]
        },
        "title": "UWA Thesis - Using Checkstyle to assess Java Pattern implementations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chaos/lmt",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    4
                ]
            ]
        },
        "title": "Lustre Monitoring Tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/drewconway/gmm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    22
                ]
            ]
        },
        "title": "This package provides a basic framework and supporting functionality for generating network structure network structure using graph motifs.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/etianen/html5media",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    8
                ]
            ]
        },
        "title": "Enables <video> and <audio> tags in all major browsers.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/thejesusbr/GPU-Color2Gray",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    26
                ]
            ]
        },
        "title": "Implements the Color2Gray algorithm using CUDA architecture",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/itm/testbed-runtime",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    9
                ]
            ]
        },
        "title": "WISEBED Wireless Sensor Network Testbed Infrastructure Software",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/teambox/teambox",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    28
                ]
            ]
        },
        "title": "This is the legacy version of Teambox - the award-winning collaboration solution, inspired by Basecamp, Yammer and Twitter.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rstudio/rstudio",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    7
                ]
            ]
        },
        "title": "RStudio is an integrated development environment (IDE) for R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/batterseapower/chsc",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    21
                ]
            ]
        },
        "title": "The Cambridge Haskell Supercompiler: an extension of \"Supercompilation by Evaluation\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bkubicek/Marlin",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    22
                ]
            ]
        },
        "title": "Reprap FW optimized for gen6",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/benlodotcom/VRToolKit",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    28
                ]
            ]
        },
        "title": "A complete iPhone app doing some virtual reality. This app uses ARToolKit plus to detect markers on the video frames and then overlays 3D objects following the movements of this marker. The code is released under GPL.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ThomasArts/Visualizing-EUnit-tests",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    25
                ]
            ]
        },
        "title": "This project aims to visualize test cases written in Erlang in a graphical finite state machine representation. The aim is to visually evaluate the quality of a test suite.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jscruggs/metric_fu",
        "issued": {
            "date-parts": [
                [
                    2008,
                    9,
                    12
                ]
            ]
        },
        "title": "A fist full of code metrics - the original but no longer the fork of reference.  See https://github.com/metricfu/metric_fu/ the definitive branch",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nkallen/screw-unit",
        "issued": {
            "date-parts": [
                [
                    2008,
                    3,
                    9
                ]
            ]
        },
        "title": "A Javascript BDD Framework with nested describes, a convenient assertion syntax, and an intuitive test browser.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tjweir/pocketchangeapp",
        "issued": {
            "date-parts": [
                [
                    2008,
                    11,
                    7
                ]
            ]
        },
        "title": "Demo Application for the Lift Book.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/technicalpickles/homesick",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    4
                ]
            ]
        },
        "title": "Your home directory is your castle. Don't leave your dotfiles behind.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dorchard/mucell",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    8
                ]
            ]
        },
        "title": "mucell: Multi-cellular, spatial, modelling and simulation tool ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dsw/proquint",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    24
                ]
            ]
        },
        "title": "Proquints: Identifiers that are Readable, Spellable, and Pronounceable",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tuukka/arc2-starter-pack",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    26
                ]
            ]
        },
        "title": "A \"seed\" for SPARQL/Linked Data apps based on PHP and ARC2",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/harwood-yoha/coal_fired_computers",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    10
                ]
            ]
        },
        "title": "Coal Fired Computers was produced for the 25th anniversary of the 1984/85 UK miners' strike with miner activists including the National Union of Mineworkers. The work employed a 17.5 ton steam engine to power a single computer for three days at the Discovery Centre, Newcastle-Upon Thyme  that displayed the records from two contentious databases, one held on the servers of the law firm soliciting claims for lung disease against the UK government and the other from the UK government itself. The databases were of miners' claims for those who have contracted Chronic Obstructive Pulmonary Disease (COPD) since 1952 and those miners that have died in mining accidents since 1700. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/somaproject/acqboard",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    19
                ]
            ]
        },
        "title": "Soma 8+2 Acquisition Module, hardware and software",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/derailed/rhouse",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    22
                ]
            ]
        },
        "title": "Home Automation using Ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/willnorris/php-xrd",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    22
                ]
            ]
        },
        "title": "XRDS-Simple (and eventually XRD) library for PHP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jchris/couchrest",
        "issued": {
            "date-parts": [
                [
                    2008,
                    3,
                    19
                ]
            ]
        },
        "title": "A RESTful CouchDB client based on Heroku's RestClient and Couch.js - you want the version at http://github.com/couchrest/couchrest",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jgre/rdtn",
        "issued": {
            "date-parts": [
                [
                    2008,
                    8,
                    4
                ]
            ]
        },
        "title": "A DTN Bundle Protocol Agent (BPA) implemented in Ruby",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/egonw/xws-taverna",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    31
                ]
            ]
        },
        "title": "XWS Plugin for Taverna",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/icefox/netflixrecommenderframework",
        "issued": {
            "date-parts": [
                [
                    2008,
                    10,
                    7
                ]
            ]
        },
        "title": "A small C++ framework for creating solutions for the Netflix prize",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/landonf/block_samples",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    5
                ]
            ]
        },
        "title": "Sample uses of C/Objective-C Blocks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dbueno/funsat",
        "issued": {
            "date-parts": [
                [
                    2008,
                    9,
                    17
                ]
            ]
        },
        "title": "An efficient, embeddable DPLL SAT solver in Haskell",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davewathaverford/the-omega-project",
        "issued": {
            "date-parts": [
                [
                    2008,
                    7,
                    1
                ]
            ]
        },
        "title": "Tools from Pugh et al.'s \"Omega Project\" for constraint-based compiler tools: The \"Omega Library\" for constraint manipulation; The \"Omega Calculator\" (text interface); the \"Omega Test\" for depedence analysis; the \"Uniform Library\" for code transformation; and the \"Code generation\" library for generating the transformed code. I am experimenting with tracking bugs with Lighthouse, but am not yet sure I've got it configure right --- see http://davew_haverford.lighthouseapp.com/projects/13658-the-omega-project/overview (if you can; if you can't, email davew@cs.haverford.edu).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tetue/tetue_trousse",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    20
                ]
            ]
        },
        "title": "Réglages par défaut pour SPIP, corrections typographiques, modèles pour pages annexes et autres préférences.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jamsjr/hard-versus-soft",
        "issued": {
            "date-parts": [
                [
                    2008,
                    12,
                    2
                ]
            ]
        },
        "title": "Um artigo sobre a diferença entre hard reservation e soft reserrvation em escalonadores de tempo real",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sandal/rbp",
        "issued": {
            "date-parts": [
                [
                    2009,
                    1,
                    10
                ]
            ]
        },
        "title": "Code examples from Ruby Best Practices",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/simonz05/django-mon",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    4
                ]
            ]
        },
        "title": "monitor api for sensor data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/reenberg/wobot",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    17
                ]
            ]
        },
        "title": "bachelor '09",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ivanistheone/arXivLDA",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    7
                ]
            ]
        },
        "title": "Latent Dirichlet Allocation algorithms for topic extraction from the arXiv pre-print data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cooldaemon/ermlia",
        "issued": {
            "date-parts": [
                [
                    2008,
                    7,
                    29
                ]
            ]
        },
        "title": "The ermlia is Erlang implementation of Kademlia. This is easy key-value store.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/alx/feevy",
        "issued": {
            "date-parts": [
                [
                    2008,
                    4,
                    16
                ]
            ]
        },
        "title": "display content from other blogs at your website with just one simple html tag",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/moses-smt/mosesdecoder",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    19
                ]
            ]
        },
        "title": "Moses, the machine translation system",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jeremybarnes/ausdm",
        "issued": {
            "date-parts": [
                [
                    2009,
                    9,
                    30
                ]
            ]
        },
        "title": "Australian Data Mining contest entry (blending of classifiers)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mprentice/pyrovio",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    13
                ]
            ]
        },
        "title": "Python controller code for Wowwee Rovio mobile webcam",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/markpercival/gibberish-aes",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    25
                ]
            ]
        },
        "title": "A fully OpenSSL compliant javascript library for AES encryption.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arcadio/msc-thesis",
        "issued": {
            "date-parts": [
                [
                    2009,
                    2,
                    20
                ]
            ]
        },
        "title": "MSc Thesis that deals with specification-based unit testing. Includes a prototype demonstrating all ideas elaborated throughout the dissertation.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brendano/dlanalysis",
        "issued": {
            "date-parts": [
                [
                    2008,
                    5,
                    30
                ]
            ]
        },
        "title": "a bunch of R code for various statistical analyses",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/xwu/trait-o-matic",
        "issued": {
            "date-parts": [
                [
                    2008,
                    6,
                    16
                ]
            ]
        },
        "title": "Trait-o-matic is an open-source tool to find and classify phenotypic correlations for variations in whole genomes. (For deployment, use the production branch.)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BIC-MNI/mni_autoreg",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    7
                ]
            ]
        },
        "title": "MINC mni_autoreg ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/midasplatform/rodent",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    8
                ]
            ]
        },
        "title": "rodent imaging module",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/midasplatform/pydas",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    15
                ]
            ]
        },
        "title": "Pure Python Interface to Midas",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pyspace/pyspace",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    8
                ]
            ]
        },
        "title": "Signal Processing And Classification Environment in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brazilbean/Matlab-Colony-Analyzer-Toolkit",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    29
                ]
            ]
        },
        "title": "A toolkit written in Matlab for quantifying microbial colonies grown on agar plates in a systematic grid.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/richardmleggett/nextclip",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    26
                ]
            ]
        },
        "title": "Nextera Long Mate Pair analysis and processing tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bjpop/rover",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    7
                ]
            ]
        },
        "title": "Read overlap variant caller.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arq5x/piledriver",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    22
                ]
            ]
        },
        "title": "Basic, no assumptions, multi-pileup",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hallamlab/utilities",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    22
                ]
            ]
        },
        "title": "A repository of bioinformatics utilities and scripts commonly used in the Steven J. Hallam Laboratory in the Microbiology & Immunology Department of the University of British Columbia (UBC), Vancouver, British Columbia, Canada.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jfmeadow/Meadow_etal_Surfaces",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    20
                ]
            ]
        },
        "title": "Analysis of bacterial communities from university classroom surfaces. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/HongjianLi/idock",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    19
                ]
            ]
        },
        "title": "idock is a multithreaded virtual screening tool for flexible ligand docking for computational drug discovery.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/HongjianLi/istar",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    24
                ]
            ]
        },
        "title": "istar is a software-as-a-service platform for bioinformatics and chemoinformatics.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tanghaibao/goatools",
        "issued": {
            "date-parts": [
                [
                    2010,
                    1,
                    15
                ]
            ]
        },
        "title": "Python scripts to find enrichment of GO terms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PacificBiosciences/blasr",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    12
                ]
            ]
        },
        "title": "BLASR: The PacBio® long read aligner",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jiantao/Tangram",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    29
                ]
            ]
        },
        "title": "Fast Structural Variation Detection Toolbox",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mgledi/BioDRUMS",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    25
                ]
            ]
        },
        "title": "This project builds up on DRUMS. It extends it by some parsers and storables. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/abucksch/FiberWalk",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    12
                ]
            ]
        },
        "title": "The implementation of the Fiber walk, which is a self avoiding random walk model including lateral expansion",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/florisvanvugt/PythonMLP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    13
                ]
            ]
        },
        "title": "A python implementation of the Maximum Likelihood Procedure to establish psychophysical thresholds.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cdk/cdk",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    11
                ]
            ]
        },
        "title": "The Chemistry Development Kit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cjlee112/phenoseq",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    20
                ]
            ]
        },
        "title": "Phenotype sequencing modeling and nextgen sequencing data analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/TGAC/statsdb",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    26
                ]
            ]
        },
        "title": "StatsDB",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/steffejr/ProcessModelsNeuroImage",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    27
                ]
            ]
        },
        "title": "Process modeling for functional and structural neuroimaging data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jcvthibault/biosim-repository",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    16
                ]
            ]
        },
        "title": "Models for biomolecular simulations DB and APIs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/munificent/github-language-ranking",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    1
                ]
            ]
        },
        "title": "Scrapes the github explore language pages to get an ordered list of languages by rank",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/indraniel/sff2fastq",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    23
                ]
            ]
        },
        "title": "extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fhcrc/hyperfreq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    13
                ]
            ]
        },
        "title": "Bayesian tool for APOBEC hypermutation analysis ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fhcrc/betarat",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    20
                ]
            ]
        },
        "title": "Bayesian analysis of contingency tables as the ratio of two binomially distributed random variables",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ctn-waterloo/nengo",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    20
                ]
            ]
        },
        "title": "A Python library for creating and simulating large-scale brain models",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kkeenan02/Fung-Keenan2013",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    29
                ]
            ]
        },
        "title": "This repository contains the Mathematica and R code from Fung and Keenan 2013",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wanpinglee/MOSAIK",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    18
                ]
            ]
        },
        "title": "reference-guided aligner for next-generation sequencing technologies",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nh13/TMAP",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    3
                ]
            ]
        },
        "title": "Torrent Mapping Alignment Program",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/StuYarrow/MapTools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    1
                ]
            ]
        },
        "title": "Matlab toolbox for quantifying and detecting topographic organisation in neural maps.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/earlywarningtoolbox/spatial_warnings",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    14
                ]
            ]
        },
        "title": "code for paper Kefi et al on spatial indicators",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LenzLab/RNA-seq-scripts",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    20
                ]
            ]
        },
        "title": "This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jauerb/CPPN_Trimesh",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    8
                ]
            ]
        },
        "title": "Code for evolving virtual organisms (modeled as triangular meshes) with CPPN-NEAT",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/groupschoof/AHRD",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    13
                ]
            ]
        },
        "title": "Moved project from Asis Hallab's Repository to this work group repository.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gabraham/SparSNP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    17
                ]
            ]
        },
        "title": "SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hamaguchikosuke/RealSong_control",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    30
                ]
            ]
        },
        "title": "realtime detection of sound and playback",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/trvrb/flux",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    9
                ]
            ]
        },
        "title": "Integrating influenza antigenic dynamics with molecular evolution",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AlastairKerr/Marston2013",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    13
                ]
            ]
        },
        "title": "Scripts and program version information.  Publication information will be updated",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ngcrawford/cloudforest",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    3
                ]
            ]
        },
        "title": "Code to calculate species trees from large genomic datasets",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ngcrawford/CloudForest",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    3
                ]
            ]
        },
        "title": "Code to calculate species trees from large genomic datasets",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wanpinglee/scissors",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    11
                ]
            ]
        },
        "title": "Split-read aligner",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/celery-kotone/GEMBASSY",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    23
                ]
            ]
        },
        "title": "EMBOSS Associated G-language SOAP service Wrapper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/modENCODE-DCC/Galaxy",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    9
                ]
            ]
        },
        "title": "modENCODE Galaxy on Amazon Cloud",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/xjchen/igyne",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    29
                ]
            ]
        },
        "title": "iGyne",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ContinuumIO/Bokeh",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    26
                ]
            ]
        },
        "title": "Interactive Web Plotting for Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/klusta-team/klustaviewa",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    20
                ]
            ]
        },
        "title": "GUI for spike sorting manual stage in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rossant/galry",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    19
                ]
            ]
        },
        "title": "High-performance interactive visualization in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rdpstaff/Clustering",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    24
                ]
            ]
        },
        "title": "RDP memory-constrained hierarchical clustering tools.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rdpstaff/fungene_pipeline",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    11
                ]
            ]
        },
        "title": "Scripts and resources for analyzing sequence data for select eco-functional genes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/danmaclean/bioruby-svgenes",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    16
                ]
            ]
        },
        "title": "SVG format genome browser style pictures",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pervouchine/bam2ssj",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    1
                ]
            ]
        },
        "title": "Utility for FAST counting splice site junctions in BAM files. This utility is deprecated and replaced by SJCOUNT.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fhcrc/nestly",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    15
                ]
            ]
        },
        "title": "Make and use nested directory trees corresponding to combinatorial choices of parameters",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/erilllab/oneill_et_al_2013",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    7
                ]
            ]
        },
        "title": "code for O'Neill et al. 2013",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/joey711/phyloseq",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    11
                ]
            ]
        },
        "title": "phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/joey711/phyloseq-demo",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    22
                ]
            ]
        },
        "title": "Extended demonstrations of the phyloseq package",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bushlab/mynclist",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    20
                ]
            ]
        },
        "title": "An implementation of the NCList datastructure in a MySQL Database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/poldrack/fmriqa",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    14
                ]
            ]
        },
        "title": "qa scripts for fMRI data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/poldrack/fsl-qa",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    17
                ]
            ]
        },
        "title": "QA scripts for FSL analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arq5x/gemini",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    15
                ]
            ]
        },
        "title": "a lightweight db framework for disease and population genetics.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BRAINSia/BRAINSTools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    19
                ]
            ]
        },
        "title": "A suite of tools for medical image processing focused on brain analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/beiko-lab/gengis",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    18
                ]
            ]
        },
        "title": "GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/princelab/rubabel",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    1
                ]
            ]
        },
        "title": "Ruby interface to the OpenBabel ruby bindings similar to pybel",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GlobalNamesArchitecture/biodiversity",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    8
                ]
            ]
        },
        "title": "Scientific Name Parser",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ged-lab/screed",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    15
                ]
            ]
        },
        "title": "a simple read-only sequence database, designed for short reads",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NeuralEnsemble/parameters",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    2
                ]
            ]
        },
        "title": "Management of large, hierarchical parameter sets for modelling and simulation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ioam/param",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    1
                ]
            ]
        },
        "title": "Param: Declarative Python programming using Parameters",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chrishah/MITObim",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    9
                ]
            ]
        },
        "title": "MITObim - mitochondrial baiting and iterative mapping",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wac/meshop",
        "issued": {
            "date-parts": [
                [
                    2008,
                    10,
                    14
                ]
            ]
        },
        "title": "Source code for Generating Medical Subject Heading Over-Representation Profiles",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wac/cmp-meshop",
        "issued": {
            "date-parts": [
                [
                    2008,
                    10,
                    14
                ]
            ]
        },
        "title": "Source Code to compare and compute performance results from two MeSHOP gene disease prediction results",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hddm-devs/hddm",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    16
                ]
            ]
        },
        "title": "HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bradtmoore/wormsizer",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    31
                ]
            ]
        },
        "title": "WormSizer",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NeuroanatomyAndConnectivity/pipelines",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    18
                ]
            ]
        },
        "title": "Neuroimgaing data processing pipelines used in the lab",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/genome/sciclone",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    14
                ]
            ]
        },
        "title": "An R package for inferring the subclonal architecture of tumors",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/thoppe/gr_svd",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    22
                ]
            ]
        },
        "title": "Singular Value Decomposition of the Radial Distribution Function for Hard Sphere and Square Well Potentials",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/eqlat/roi",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    14
                ]
            ]
        },
        "title": "Repository of rutines for Equivalent Latitude computation using Regions of Interest",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hallamlab/MetaPathways",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    4
                ]
            ]
        },
        "title": "A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zhandong/DSA",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    7
                ]
            ]
        },
        "title": "Digital Sorting Algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/putnampp/libgwaspp",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    31
                ]
            ]
        },
        "title": "A C++ library of common Genome Wide Association Study data structures.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/averissimo/model_blackbox",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    19
                ]
            ]
        },
        "title": "Octave/Matlab toolbox that performs parameters estimation on algebraic or differential equations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CBMi-BiG/bamchop",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    1
                ]
            ]
        },
        "title": "Generate a targeted resequencing report from a BAM file",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/warnname/PSLDoc",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    18
                ]
            ]
        },
        "title": "Protein Subcellular Localization Prediction based on based on gapped-dipeptides and probabilistic latent semantic analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/warnname/FCS",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    20
                ]
            ]
        },
        "title": "find compact set",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CampagneLaboratory/gobyweb2-plugins",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    30
                ]
            ]
        },
        "title": "Plugin repository for GobyWeb 2.2+",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/etal/fammer",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    9
                ]
            ]
        },
        "title": "For protein superfamily sequence profile alignment and curation.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CampagneLaboratory/goby",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    2
                ]
            ]
        },
        "title": "Goby framework and tools for analysis of high-throughput sequencing data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kasiazar/NeandertalBoneMetagenome",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    13
                ]
            ]
        },
        "title": "Storage for files and scripts for the Neandertal bone metagenome project.",
        "type": "dataset"
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    {
        "URL": "https://github.com/SimonCB765/Leaf",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    23
                ]
            ]
        },
        "title": "Code for the Leaf independent set finding algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Victorian-Bioinformatics-Consortium/VelvetOptimiser",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    6
                ]
            ]
        },
        "title": "Automatically optimise three of Velvet's assembly parameters.",
        "type": "dataset"
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    {
        "URL": "https://github.com/arq5x/bedtools2",
        "issued": {
            "date-parts": [
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                    2013,
                    12,
                    9
                ]
            ]
        },
        "title": "A powerful toolset for genome arithmetic.",
        "type": "dataset"
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    {
        "URL": "https://github.com/sujaikumar/assemblage",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    18
                ]
            ]
        },
        "title": "Tools for working with second gen assemblies, fasta sequences, etc",
        "type": "dataset"
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    {
        "URL": "https://github.com/elswob/SCUBAT",
        "issued": {
            "date-parts": [
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                    2012,
                    2,
                    21
                ]
            ]
        },
        "title": "Scaffolding contigs using blat and transcripts",
        "type": "dataset"
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    {
        "URL": "https://github.com/luscinius/afcluster",
        "issued": {
            "date-parts": [
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                    2013,
                    5,
                    14
                ]
            ]
        },
        "title": "alignment free clustering utility",
        "type": "dataset"
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    {
        "URL": "https://github.com/arokem/motion_th",
        "issued": {
            "date-parts": [
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                    2009,
                    10,
                    26
                ]
            ]
        },
        "title": "Motion direction discrimination threshold measurements with Psychtoolbox",
        "type": "dataset"
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    {
        "URL": "https://github.com/songlab/NSeq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    1
                ]
            ]
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        "title": "Java software for nucleosome positioning",
        "type": "dataset"
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    {
        "URL": "https://github.com/URVnutrigenomica-CTNS/VHELIBS",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    13
                ]
            ]
        },
        "title": "Validation HElper for LIgands and Binding Sites",
        "type": "dataset"
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    {
        "URL": "https://github.com/carlosp420/deltagamma",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    4
                ]
            ]
        },
        "title": "multi deltagamma analysis",
        "type": "dataset"
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    {
        "URL": "https://github.com/bjpop/favr",
        "issued": {
            "date-parts": [
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                    2011,
                    12,
                    12
                ]
            ]
        },
        "title": "Filtering and Annotation of Variants that are Rare",
        "type": "dataset"
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    {
        "URL": "https://github.com/CSB5/16s-arxiv-1210.3464",
        "issued": {
            "date-parts": [
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                    2013,
                    2,
                    26
                ]
            ]
        },
        "title": "Auxiliary scripts for Ong et al. (2013): Species Identification and Unbiased Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences",
        "type": "dataset"
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    {
        "URL": "https://github.com/eisenlab/SliceSeq",
        "issued": {
            "date-parts": [
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                    2013,
                    7,
                    4
                ]
            ]
        },
        "title": "Tools and scripts for \"Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RGLab/SingleCellAssay",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    11
                ]
            ]
        },
        "title": "Tools and methods for analysis of single cell assay data in R",
        "type": "dataset"
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    {
        "URL": "https://github.com/arq5x/bits",
        "issued": {
            "date-parts": [
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                    2012,
                    8,
                    15
                ]
            ]
        },
        "title": "BITS: Binary Interval Search",
        "type": "dataset"
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    {
        "URL": "https://github.com/gusmacaulay/agent-walkability",
        "issued": {
            "date-parts": [
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                    2012,
                    10,
                    12
                ]
            ]
        },
        "title": "ANDS/AURIN Agent Based Walkability",
        "type": "dataset"
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    {
        "URL": "https://github.com/adarob/express-d",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    13
                ]
            ]
        },
        "title": "Distributed ambiguous fragment assignment using eXpress and Spark.",
        "type": "dataset"
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    {
        "URL": "https://github.com/uci-cbcl/GBMCI",
        "issued": {
            "date-parts": [
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                    2013,
                    4,
                    15
                ]
            ]
        },
        "title": "The implementation of gradient boosting machine for concordance index learning.",
        "type": "dataset"
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    {
        "URL": "https://github.com/mkutmon/cytargetlinker",
        "issued": {
            "date-parts": [
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                    2013,
                    5,
                    3
                ]
            ]
        },
        "title": "CyTargetLinker 3.0: Cytoscape app to build regulatory networks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Sage-Bionetworks/Synapse-Repository-Services",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    22
                ]
            ]
        },
        "title": "The Synapse Repository Services project is the home of the JSON REST web services for Synapse.",
        "type": "dataset"
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    {
        "URL": "https://github.com/hansiglaser/facet",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    19
                ]
            ]
        },
        "title": "Flexible Artifact Correction and Evaluation Toolbox for concurrelty recorded EEG/fMRI data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/najoshi/sickle",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    9
                ]
            ]
        },
        "title": "Windowed Adaptive Trimming for fastq files using quality",
        "type": "dataset"
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    {
        "URL": "https://github.com/richardmleggett/bubbleparse",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    25
                ]
            ]
        },
        "title": "Classify and rank SNPs identified by cortex_con",
        "type": "dataset"
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    {
        "URL": "https://github.com/ajmazurie/MutationsHunter",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    24
                ]
            ]
        },
        "title": "Calculation of dN/dS ratio between diverging coding sequences, such as ortholog or paralog genes",
        "type": "dataset"
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    {
        "URL": "https://github.com/raldecoa/ClosedBenchmarks",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    27
                ]
            ]
        },
        "title": "Perl script to generate Closed Benchmarks for testing community detection algorithms",
        "type": "dataset"
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    {
        "URL": "https://github.com/damianopiovesan/cogic",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    4
                ]
            ]
        },
        "title": "Cogic score calculation (Python library)",
        "type": "dataset"
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    {
        "URL": "https://github.com/Pacopag/fpau",
        "issued": {
            "date-parts": [
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                    2013,
                    7,
                    15
                ]
            ]
        },
        "title": "Simple model of land use dynamics",
        "type": "dataset"
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    {
        "URL": "https://github.com/fbmyers/MicroBAR",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    29
                ]
            ]
        },
        "title": "This repository contains hardware, firmware, and software revisions to the Microfluidic Bioamplification Reader (MicroBAR) from UC Berkeley.",
        "type": "dataset"
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    {
        "URL": "https://github.com/HumMod/small-stoch-model",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    13
                ]
            ]
        },
        "title": "A stochastic validation module built atop the small integrative model of circulatory physiology from Tom Coleman's Blue Book.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/friend1ws/EBCall",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    9
                ]
            ]
        },
        "title": "an empirical Bayesian framework for mutation detection from cancer genome sequencing data",
        "type": "dataset"
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    {
        "URL": "https://github.com/uci-cbcl/tree-hmm",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    14
                ]
            ]
        },
        "title": "Tree hidden Markov model for learning epigenetic states in multiple cell types",
        "type": "dataset"
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    {
        "URL": "https://github.com/janelia-flyem/gala",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    13
                ]
            ]
        },
        "title": "Automatic segmentation of electron microscopy volumes",
        "type": "dataset"
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    {
        "URL": "https://github.com/ntustison/BSplineMorphisms",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    26
                ]
            ]
        },
        "title": "Your weirdness is actually affecting my vocal cords",
        "type": "dataset"
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    {
        "URL": "https://github.com/cni/rtfmri",
        "issued": {
            "date-parts": [
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                    2013,
                    3,
                    13
                ]
            ]
        },
        "title": "Real-time fMRI for a GE MRI system",
        "type": "dataset"
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    {
        "URL": "https://github.com/distrep/DMLT",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    17
                ]
            ]
        },
        "title": "Donders Machine Learning Toolbox",
        "type": "dataset"
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    {
        "URL": "https://github.com/faircloth-lab/msatcommander-gs",
        "issued": {
            "date-parts": [
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                    2012,
                    8,
                    5
                ]
            ]
        },
        "title": "A grown-up version of msatcommander for genome-scale data",
        "type": "dataset"
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    {
        "URL": "https://github.com/cbib/MIX",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    18
                ]
            ]
        },
        "title": "MIX: Combining multiple assemblies from NGS data",
        "type": "dataset"
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    {
        "URL": "https://github.com/explodecomputer/epiSpaces",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    14
                ]
            ]
        },
        "title": "Find epistatic patterns that maintain additive genetic variance under selection",
        "type": "dataset"
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    {
        "URL": "https://github.com/explodecomputer/epiFit",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    15
                ]
            ]
        },
        "title": "Assess the contribution of epistasis to fitness related traits using stochastic population simulations",
        "type": "dataset"
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    {
        "URL": "https://github.com/dsturg/Spanki",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    2
                ]
            ]
        },
        "title": "Splicing analysis toolkit for RNA-SEQ",
        "type": "dataset"
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    {
        "URL": "https://github.com/LiU-IMT/EEE",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    30
                ]
            ]
        },
        "title": "A REST based Educational EHR Environment based on openEHR",
        "type": "dataset"
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    {
        "URL": "https://github.com/vsbuffalo/sickle",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    9
                ]
            ]
        },
        "title": "Windowed adaptive trimming for fastq files using quality",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GarnetVaz/Nonlinear-electrical-oscillators",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    20
                ]
            ]
        },
        "title": "Code to obtain the results in the paper.",
        "type": "dataset"
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    {
        "URL": "https://github.com/hadley/ggplot2",
        "issued": {
            "date-parts": [
                [
                    2008,
                    5,
                    25
                ]
            ]
        },
        "title": "An implementation of the Grammar of Graphics in R",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/martijnvermaat/bio-playground",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    11
                ]
            ]
        },
        "title": "Random collection of bioinformatics thingies",
        "type": "dataset"
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    {
        "URL": "https://github.com/larrylindsey/MatlabCode",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    22
                ]
            ]
        },
        "title": "My personal stash of matlab code. Please excuse the mess.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matthewberryman/author-detection",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    5
                ]
            ]
        },
        "title": "Software for statistically determining the author of a text based on a training set.",
        "type": "dataset"
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    {
        "URL": "https://github.com/michaeldnowak/snape",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    1
                ]
            ]
        },
        "title": "Single Node Age Prior Estimation (SNAPE) is designed to calculate informative divergence time priors based on a relatively complete assessment of the fossil record of a single clade.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gjospin/PhyloSift",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    29
                ]
            ]
        },
        "title": "Phylogenetic and taxonomic analysis for genomes and metagenomes",
        "type": "dataset"
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    {
        "URL": "https://github.com/VisLab/DETECT",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    30
                ]
            ]
        },
        "title": "MATLAB toolbox for continuous event detection",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/frankyeh/DSI-Studio",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    21
                ]
            ]
        },
        "title": "Diffusion MRI analysis tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/homonecloco/PyroClean",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    22
                ]
            ]
        },
        "title": "PyroClean is a tool to denoise homopolymers from pyrosequence technologies. It is based on a reference sequence and the main aim is to handle homopolymers. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rhodricusack/automaticanalysis",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    24
                ]
            ]
        },
        "title": "Automatic analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jcupitt/protsift",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    25
                ]
            ]
        },
        "title": "tools for proteomic analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sriesenfeld/MetaPASSAGE",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    12
                ]
            ]
        },
        "title": "A Metagenomic Pipieline for Automated Simulations and Analysis of Gene Families (source code)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/inureyes/network-backbone-toolkit",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    17
                ]
            ]
        },
        "title": "Network backbone toolkit",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ddalevi/tissue-specificity",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    27
                ]
            ]
        },
        "title": "R-files related to work \"Combining evidence of preferential Gene-Tissue relationships from multiple sources\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/caballero/RepeatLandscape",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    26
                ]
            ]
        },
        "title": "profile the repeat landscape in a genome",
        "type": "dataset"
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    {
        "URL": "https://github.com/cni/nims",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    25
                ]
            ]
        },
        "title": "NIMS: Neurobiological Image Management System",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ioam/topographica",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    20
                ]
            ]
        },
        "title": "A general-purpose neural simulator focusing on topographic maps.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jebyrnes/otu-frontiers",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    8
                ]
            ]
        },
        "title": "Code for the analysis of sequence and OTU occurance data to derive optimal taxonomic structures for bacterial communities.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/anj1/cdac",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    23
                ]
            ]
        },
        "title": "Cell-Derived Active Contour algorithm for tracking cells in live microscopy images",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/InsightSoftwareConsortium/ITKExamples",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    12
                ]
            ]
        },
        "title": "Examples for the Insight Toolkit.  http://itk.org/ITKExamples",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gglusman/Normalizer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    9
                ]
            ]
        },
        "title": "Code for normalizing count data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wleepang/CuEfflux",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    18
                ]
            ]
        },
        "title": "Code for Cu Efflux Models",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jonovik/cgptoolbox",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    17
                ]
            ]
        },
        "title": "A toolbox for causally cohesive genotype-phenotype studies",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/graham1034/Smith2012_insulin_signalling",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    21
                ]
            ]
        },
        "title": "files for Smith & Shanley 2012 insulin signalling and oxidative stress project ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pn2200/g3data",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    1
                ]
            ]
        },
        "title": "Grab graph data, a program for extracting data from graphs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matsen/pplacer",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    7
                ]
            ]
        },
        "title": "Phylogenetic placement and downstream analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NYUCCL/PsiTurk",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    30
                ]
            ]
        },
        "title": "An open platform for science on Amazon Mechanical Turk.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mattions/TimeScales",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    11
                ]
            ]
        },
        "title": "Multimodelling framework supported by an event-driven algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/vice87/gam-ngs",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    21
                ]
            ]
        },
        "title": "Genomic Assemblies Merger for NGS",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zhixingfeng/seqPatch",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    30
                ]
            ]
        },
        "title": "R package detecting DNA modifications by kinetic data of SMRT sequencing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/seeslab/drugraph",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    2
                ]
            ]
        },
        "title": "A network inference method for large-scale unsupervised identification of novel drug-drug interactions.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kappamodeler/rulestudio",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    16
                ]
            ]
        },
        "title": "An eclipse plugin for editing the Kappa modeling language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sorgerlab/eydgahi_et_al_bayesian_estimation",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    18
                ]
            ]
        },
        "title": "Code and data to support \"Properties of cell death models calibrated and compared using Bayesian approaches\" by Eydgahi et al.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/eladnoor/component-contribution",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    10
                ]
            ]
        },
        "title": "Standard reaction Gibbs energy estimation for biochemical reactions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lima1/maphylogeny",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    23
                ]
            ]
        },
        "title": "Gene Expression Phylogenies",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jkrivine/KaSim",
        "issued": {
            "date-parts": [
                [
                    2010,
                    10,
                    24
                ]
            ]
        },
        "title": "Command line stochastic simulator for kappa models. Documentation can be found in the man/ directory ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/OpenTreeOfLife/treemachine",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    3
                ]
            ]
        },
        "title": "Source tree graph database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/hyphaltip/fungaltools",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    6
                ]
            ]
        },
        "title": "Misc scripts for fungal tools, mostly for use in papers",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/polyatail/scher_et_al_2013",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    27
                ]
            ]
        },
        "title": "Intermediate data and analysis tools from Scher et al., eLife, 2013",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rkostadi/BEClonalEvolutionNSAID",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    14
                ]
            ]
        },
        "title": "R package accompanying \"NSAIDs modulation clonal evolution in Barrett's esophagus\" study by Kostadinov et al",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kelleyharris/Inferring-demography-from-IBS",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    29
                ]
            ]
        },
        "title": "A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/widdowquinn/scripts",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    2
                ]
            ]
        },
        "title": "Miscellaneous scripts",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pcarbo/bmapathway",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    18
                ]
            ]
        },
        "title": "MATLAB source code to accompany the PLoS Genetics paper, \"Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease\".",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mfiers/hagfish",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    13
                ]
            ]
        },
        "title": "Hagfish - assess an assembly through creative use of coverage plots ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/labello/pycelegans",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    4
                ]
            ]
        },
        "title": "Parallel image processing code that identifies C. elegans in images",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/miguelgodinho/tobin",
        "issued": {
            "date-parts": [
                [
                    2012,
                    7,
                    16
                ]
            ]
        },
        "title": "Toolbox for Biochemical Networks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/njbooher/boglab_talesf",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    17
                ]
            ]
        },
        "title": "Target Finder tool for TAL Effector Nucleotide Targeter 2.0",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/misshie/bioruby-ucsc-api",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    18
                ]
            ]
        },
        "title": "Ruby UCSC API: An API for the UCSC Genome Database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brentp/cruzdb",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    2
                ]
            ]
        },
        "title": "python access to UCSC genomes database",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/need47/fselector",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    27
                ]
            ]
        },
        "title": "a Ruby gem for feature selection and ranking",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jonasalmeida/webrw",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    27
                ]
            ]
        },
        "title": "webrw for node.js",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ebadedude/webrw",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    19
                ]
            ]
        },
        "title": "A collection of tools that help you to grab URL content and also index the URLs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cfljam/galaxy-pcr-markers",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    8
                ]
            ]
        },
        "title": "Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jcvi/METAREP",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    18
                ]
            ]
        },
        "title": "METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jcvi/JCVI_HMP_metagenomic_pipeline",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    17
                ]
            ]
        },
        "title": "Metagenomic functional annotation pipeline, used within the Human Microbiome Project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davidsun/SAP",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    30
                ]
            ]
        },
        "title": "A DNA sequence analysing & mutation predicting tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/widdowquinn/find_differential_primers",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    30
                ]
            ]
        },
        "title": "Scripts to aid the design of differential primers for diagnostic PCR.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mtholder/PhyPatClassProb",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    10
                ]
            ]
        },
        "title": "dynamic programming algorithm for calculating the probability of classes of data patterns on a phylogeny",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/srcbs/GenoBox",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    13
                ]
            ]
        },
        "title": "Alignment, Assembly and Genotyping of NGS data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/slowkow/soy-rtms",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    22
                ]
            ]
        },
        "title": "Computational analysis of retrotransposon-associated minisatellite DNAs in the soybean genome",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SHird/lociNGS",
        "issued": {
            "date-parts": [
                [
                    2011,
                    5,
                    19
                ]
            ]
        },
        "title": "Code for my Summer of Code Project, \"loci-NGS\", which is a program for manipulating, storing and outputting large multi-locus datasets.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/neufeld/pandaseq",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    22
                ]
            ]
        },
        "title": "PAired-eND Assembler for DNA sequences",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/faircloth-lab/demuxipy",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    3
                ]
            ]
        },
        "title": "Locate, error-correct, trim, and organize (hierarchically) sequence-tagged next-generation DNA reads",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/krm15/ACME",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    9
                ]
            ]
        },
        "title": "This repository contains open-source C++ code for reconstructing membranes from time-lapse confocal/2-photon image data. Please refer to the webpage below for detailed instructions, precompiled binaries, and sample data for testing the code.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dstern/pull_thin",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    28
                ]
            ]
        },
        "title": "Starting with tsv files from MSG, pull requested individuls and thin data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dstern/read_cross_msg",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    28
                ]
            ]
        },
        "title": "Import MSG tsv files into r-qtl",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GlobalNamesArchitecture/taxamatch_rb",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    8
                ]
            ]
        },
        "title": "Implementation of Tony Rees' Taxamatch algorithms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BerndWollenweber/PollenCALC",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    19
                ]
            ]
        },
        "title": "Software for estimation of pollen compatibility of self-incompatible allo- and autotetraploid species",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/matsen/ubiquity_synonymity",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    3
                ]
            ]
        },
        "title": "Code to accompany the paper \"Ubiquity of synonymity: almost all large binary trees are not uniquely identified by their spectra or their immanantal polynomials\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/seandavi/ngCGH",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    25
                ]
            ]
        },
        "title": "Tools for producing pseudo-cgh of next-generation sequencing data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andorardo/fade",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    31
                ]
            ]
        },
        "title": "Fast automated blind deconvolution of multi-phasic EPSCs.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/usm/usm.github.com",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    5
                ]
            ]
        },
        "title": "Universal Sequence Maps",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MG-RAST/DRISEE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    6
                ]
            ]
        },
        "title": "duplicate read inferred sequencing error estimator ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/johncolby/SVM-RFE",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    12
                ]
            ]
        },
        "title": "An R implementation of the (multiple) Support Vector Machine Recursive Feature Elimination (mSVM-RFE) feature ranking algorithm",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jyeatman/AFQ",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    24
                ]
            ]
        },
        "title": "Automated Fiber Quantification",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/koepsell/phase-coupling-estimation",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    25
                ]
            ]
        },
        "title": "Implementation of Phase Coupling Estimation in Python and Matlab (see http://arxiv.org/abs/0906.3844 )",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/chrisfilo/Adaptive-Thresholding",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    1
                ]
            ]
        },
        "title": "Combination of Gamma Gaussian Mixture model and topological FDR for thresholding fMRI statistical maps.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/qedq/NeuroProof",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    25
                ]
            ]
        },
        "title": "Suite of tools for analyzing and guiding image segmentation refinement.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/VectorBase/GDAV",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    2
                ]
            ]
        },
        "title": "A simple Java web application for serving biological sequence annotations.  Includes bundled Dazzle-based DAS server.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kylebittinger/polyafit",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    9
                ]
            ]
        },
        "title": "R package for fitting data to multivariate Polya distribution",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brantp/rtd",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    8
                ]
            ]
        },
        "title": "reference-free ddRADseq analysis tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/stevenhwu/BIDE-2D",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    8
                ]
            ]
        },
        "title": "BIDE-2D: Bayesian Inference of Differential Expression in 2D-PAGE",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/stefan-hoeck/chemf",
        "issued": {
            "date-parts": [
                [
                    2012,
                    8,
                    22
                ]
            ]
        },
        "title": "A purely functional cheminformatics toolkit written in Scala",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/odj/Ouch",
        "issued": {
            "date-parts": [
                [
                    2010,
                    6,
                    1
                ]
            ]
        },
        "title": "Ouch Uses Chemical Haskell",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/harrah/xsbt",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    5
                ]
            ]
        },
        "title": "*NOTE* sbt has moved to the sbt organization!",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ajmazurie/xstats.enrichment",
        "issued": {
            "date-parts": [
                [
                    2010,
                    5,
                    7
                ]
            ]
        },
        "title": "enrichment (subset of the xstats package) is a Python library providing two methods to perform enrichment analysis, such as gene set enrichment analysis in bioinformatics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/poldrack/LatentStructure",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    3
                ]
            ]
        },
        "title": "code and data from Latent Structure modeling paper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gdurin/pyFitting",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    19
                ]
            ]
        },
        "title": "Python tools to best fit data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/benosteen/Kinect-tracking-code",
        "issued": {
            "date-parts": [
                [
                    2011,
                    1,
                    26
                ]
            ]
        },
        "title": "Some demo python code to read, visualise and re-broadcast information emitted from https://github.com/Sensebloom/OSCeleton",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nipy/nipype",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    22
                ]
            ]
        },
        "title": "Workflows and interfaces for neuroimaging packages",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/misshie/Workflows",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    28
                ]
            ]
        },
        "title": "Pwrake for bioinfomatics workflows using GATK and Dindel ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jonalv/bioclipse.brunn",
        "issued": {
            "date-parts": [
                [
                    2009,
                    7,
                    14
                ]
            ]
        },
        "title": "Brunn is a laboratory information system for Bioclipse 2. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/VectorBase/ExpressionMap",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    1
                ]
            ]
        },
        "title": "The \"all genes, all conditions\" expression map from VectorBase.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pubmed2ensembl/MartScript",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    29
                ]
            ]
        },
        "title": "A scripting language for automatically creating BioMarts.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pubmed2ensembl/biomart-plus-extras",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    29
                ]
            ]
        },
        "title": "An extended version of BioMart 0.7 (www.biomart.org).",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/putnamlab/dcj-c",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    3
                ]
            ]
        },
        "title": "Double_Cut_Join_Dosage_Sensitive ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AZcompTox/AZOrange",
        "issued": {
            "date-parts": [
                [
                    2010,
                    8,
                    30
                ]
            ]
        },
        "title": "AstraZeneca add-ons to Orange.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JoseBlanca/franklin",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    26
                ]
            ]
        },
        "title": "franklin library for NGS sequencing analysis.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cjfields/biome",
        "issued": {
            "date-parts": [
                [
                    2009,
                    3,
                    7
                ]
            ]
        },
        "title": "An experimental Moose-based BioPerl implementation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/emepyc/Blast2lca",
        "issued": {
            "date-parts": [
                [
                    2010,
                    11,
                    9
                ]
            ]
        },
        "title": "Calculates the lowest common ancestors of each query sequence in a Blast result",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/poldrack/cogat",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    25
                ]
            ]
        },
        "title": "Cognitive Atlas",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jesselstyn/Island-colonization",
        "issued": {
            "date-parts": [
                [
                    2010,
                    2,
                    8
                ]
            ]
        },
        "title": "A simulator to test for over-dispersion in species' distributions",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/skilpinen/AGEP",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    11
                ]
            ]
        },
        "title": "Alignment of expression profiles",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nwilming/ocupy",
        "issued": {
            "date-parts": [
                [
                    2011,
                    2,
                    22
                ]
            ]
        },
        "title": "A python toolbox for analyzing eye-tracking data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pyelton/Synteny-based-annotator",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    13
                ]
            ]
        },
        "title": "This collection of scripts will provide annotations for hypothetical proteins and poorly-annotated prokaryotic genes. If you are a microbiologist with a newly sequenced genome, I highly recommend this script. The citation for the paper on the method development can be found here:                                           Yelton, A.P., Thomas B.C., Simmons, S.L., Wilmes P., Zemla A., Thelen M.P., Justice N., Banfield J.F. A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. PLoS Computational Biology. In press. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dasmoth/metharray-scripts",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    15
                ]
            ]
        },
        "title": "Scripts for normalization and analysis of methylation array data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nickloman/entrezajax",
        "issued": {
            "date-parts": [
                [
                    2010,
                    4,
                    15
                ]
            ]
        },
        "title": "EntrezAJAX - Direct Web Browser Access to the Entrez Programming Utilities",
        "type": "dataset"
    },
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        "URL": "https://github.com/wwood/essentiality",
        "issued": {
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                    23
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            ]
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        "title": "Finding patterns to predict the essentiality of genes",
        "type": "dataset"
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        "URL": "https://github.com/wwood/goruby",
        "issued": {
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                    10
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            ]
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        "title": "Gene Ontology (GO) interface for Ruby",
        "type": "dataset"
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    {
        "URL": "https://github.com/mz2/mxplor",
        "issued": {
            "date-parts": [
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                    8
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            ]
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        "title": "A Java / QT based sequence motif viewer / editor (out of which iMotifs was born)",
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    {
        "URL": "https://github.com/coxlab/eyetracker",
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                    8
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        "title": "Software for our self-calibrating eye tracker",
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                    15
                ]
            ]
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        "title": "Implementation of an algorithm that can determine small RNA generative loci from high-throughput sequencing data. ",
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    {
        "URL": "https://github.com/articlemetrics/alm",
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                    2
                ]
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        "title": "Article-Level Metrics - Alternative Measures to Gauge the Impact of Research",
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        "URL": "https://github.com/rOpenSci/dvn",
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                    9
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        "title": "Access to the Dataverse Network APIs from R",
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                    5
                ]
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        "title": "MPWide is a communication library for message passing across wide area networks.",
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        "URL": "https://github.com/taverna/taverna-commandline-product",
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                    26
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        "title": "Taverna Command Line product build and installers",
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                    3
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        "title": "BioJava is an open-source project dedicated to providing a Java framework for processing biological data.",
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                    26
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                ]
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                    4
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                    1
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                    22
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        "title": "Ratatosk extension for use at Science for Life Laboratory",
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                    16
                ]
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                    17
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        "title": "Repository for BioHackathon 2011",
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        "URL": "https://github.com/dbcls/bh12",
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                    11
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        "title": "NBDC/DBCLS BioHackathon 2012",
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                    25
                ]
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        "title": "Add-on to DESeq to improve p-values and q-values",
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        "URL": "https://github.com/larisa-soldatova/EXACT",
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                ]
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        "title": "an ontology for biomedical protocols",
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        "URL": "https://github.com/ksahlin/BESST",
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                    22
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        "title": "BESST - scaffolder for genomic assemblies",
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    {
        "URL": "https://github.com/obophenotype/uberon",
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        "title": "uber-anatomy ontology",
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                    17
                ]
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        "title": "A Java MQTT Client",
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        "URL": "https://github.com/Flowdalic/asmack",
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                    26
                ]
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        },
        "title": "A build environment for the XMPP client library Smack on Android",
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    {
        "URL": "https://github.com/pophealth/hqmf2js",
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                    12
                ]
            ]
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        "title": "Library to convert HQMF to JavaScript",
        "type": "dataset"
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                    5
                ]
            ]
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        "title": "A platform for World Wide Computing",
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                ]
            ]
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        "title": "JavaScript framework for distributing and scheduling computations",
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    {
        "URL": "https://github.com/douglascrockford/JSON-js",
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                    18
                ]
            ]
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        "title": "JSON in JavaScript",
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    {
        "URL": "https://github.com/fbergmann/CombineArchive",
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                    4,
                    4
                ]
            ]
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        "title": "Libraries and Tools for accessing the COMBINE archive",
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    {
        "URL": "https://github.com/mglont/CombineArchive",
        "issued": {
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                    7,
                    26
                ]
            ]
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        "title": "A Java Library to support the Combine Archive",
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    {
        "URL": "https://github.com/stain/ro-combine-archive",
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                    4,
                    25
                ]
            ]
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        "title": "Convert Combine Archive (OMEX) to RO Bundle",
        "type": "dataset"
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    {
        "URL": "https://github.com/balhoff/image-depictions-view",
        "issued": {
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                    3,
                    25
                ]
            ]
        },
        "title": "Protégé plugin which displays image depictions of classes and individuals.",
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    {
        "URL": "https://github.com/balhoff/obo-actions",
        "issued": {
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                    12,
                    5
                ]
            ]
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        "title": "Protégé menu actions implementing OBO ontology editing conventions.",
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    {
        "URL": "https://github.com/idekerlab/genomespace-cytoscape-weblaunch",
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                    5,
                    23
                ]
            ]
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        "title": "GenomeSpace Cytoscape Weblaunch",
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    {
        "URL": "https://github.com/idekerlab/genomespace-cytoscape",
        "issued": {
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                    1,
                    28
                ]
            ]
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        "title": "GenomeSpace for Cytoscape 3.x (core project)",
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    {
        "URL": "https://github.com/F1000Research/genomespace-cytoscape-weblaunch",
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                    6,
                    11
                ]
            ]
        },
        "title": "GenomeSpace Cytoscape Weblaunch",
        "type": "dataset"
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    {
        "URL": "https://github.com/F1000Research/genomespace-cytoscape",
        "issued": {
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                    2014,
                    6,
                    17
                ]
            ]
        },
        "title": "GenomeSpace for Cytoscape 3.x (core project)",
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    {
        "URL": "https://github.com/INCF/one_click",
        "issued": {
            "date-parts": [
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                    10,
                    4
                ]
            ]
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        "title": "One Click Sharing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/julian-gehring/GMAP-GSNAP",
        "issued": {
            "date-parts": [
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                    12,
                    7
                ]
            ]
        },
        "title": "*DEPREACATED and OUTDATED*: This was an inofficial archive of GMAP-GSNAP releases.  Please use the original website for current versions of the source code.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/geoffjentry/twitteR",
        "issued": {
            "date-parts": [
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                    2011,
                    8,
                    10
                ]
            ]
        },
        "title": "R based twitter client",
        "type": "dataset"
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    {
        "URL": "https://github.com/jeffreybreen/twitter-sentiment-analysis-tutorial-201107",
        "issued": {
            "date-parts": [
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                    2011,
                    7,
                    13
                ]
            ]
        },
        "title": "Code to reproduce the simple sentiment analysis from my presentation",
        "type": "dataset"
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    {
        "URL": "https://github.com/2mh/PyBioC",
        "issued": {
            "date-parts": [
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                    9,
                    1
                ]
            ]
        },
        "title": "Python library for work with BioCreative files",
        "type": "dataset"
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    {
        "URL": "https://github.com/dongseop/simple_bioc",
        "issued": {
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                    12,
                    4
                ]
            ]
        },
        "title": "Simple BioC parser/builder for ruby",
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    {
        "URL": "https://github.com/CovertLab/WholeCellSimDB",
        "issued": {
            "date-parts": [
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                    2,
                    28
                ]
            ]
        },
        "title": "WholeCellDB is a hybrid SQL/HDF database for storing and retrieving whole-cell model predictions. ",
        "type": "dataset"
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    {
        "URL": "https://github.com/mfcovington/SNPtools",
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                    2013,
                    7,
                    25
                ]
            ]
        },
        "title": "",
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    {
        "URL": "https://github.com/MaloofLab/devisetty-g3-2014",
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                    5,
                    14
                ]
            ]
        },
        "title": "",
        "type": "dataset"
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    {
        "URL": "https://github.com/mfcovington/vcf-generator",
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                    5,
                    7
                ]
            ]
        },
        "title": "",
        "type": "dataset"
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    {
        "URL": "https://github.com/mytardis/mytardis-salt",
        "issued": {
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                    2014,
                    1,
                    29
                ]
            ]
        },
        "title": "MyTardis server configuration using Saltstack",
        "type": "dataset"
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    {
        "URL": "https://github.com/shenlab-sinai/region_analysis",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    12
                ]
            ]
        },
        "title": "A python script used to annotate genomic intervals.",
        "type": "dataset"
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    {
        "URL": "https://github.com/MG-RAST/matR",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    13
                ]
            ]
        },
        "title": "Metagenomics Analysis Tools",
        "type": "dataset"
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    {
        "URL": "https://github.com/aestrivex/cvu",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    7
                ]
            ]
        },
        "title": "Connectome visualization utility",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/namsyvo/RandAL",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    2
                ]
            ]
        },
        "title": "A Randomized Sequence Aligner",
        "type": "dataset"
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    {
        "URL": "https://github.com/dariogf/SeqtrimNext",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    7
                ]
            ]
        },
        "title": "SeqtrimNEXT is a customizable and distributed pre-processing software for NGS (Next Generation Sequencing) biological data. It makes use of scbi_mapreduce gem to be able to run in parallel and distributed environments. It is specially suited for Roche 454 (normal and paired-end) & Ilumina datasets, although it could be easyly adapted to any other situation.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/scikit-image/scikit-image",
        "issued": {
            "date-parts": [
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                    2011,
                    7,
                    7
                ]
            ]
        },
        "title": "Image Processing SciKit (Toolbox for SciPy)",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/numpy/numpy",
        "issued": {
            "date-parts": [
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                    2010,
                    9,
                    13
                ]
            ]
        },
        "title": "Numpy main repository",
        "type": "dataset"
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    {
        "URL": "https://github.com/losonczylab/sima",
        "issued": {
            "date-parts": [
                [
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                    8,
                    1
                ]
            ]
        },
        "title": "Python package for analysis of dynamic fluorescence microscopy data",
        "type": "dataset"
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    {
        "URL": "https://github.com/dnil/etiologica",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    1
                ]
            ]
        },
        "title": "Pipelines and decision support tools for Massively Parallel Human Medical Genetics",
        "type": "dataset"
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    {
        "URL": "https://github.com/jeffalstott/powerlaw",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    30
                ]
            ]
        },
        "title": "",
        "type": "dataset"
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    {
        "URL": "https://github.com/obophenotype/cephalopod-ontology",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    23
                ]
            ]
        },
        "title": "Ontology of cephalopod anatomy and traits",
        "type": "dataset"
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    {
        "URL": "https://github.com/Sabryr/EGDMS",
        "issued": {
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                [
                    2014,
                    2,
                    6
                ]
            ]
        },
        "title": "EGDMS",
        "type": "dataset"
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    {
        "URL": "https://github.com/tknijnen/MSR",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    31
                ]
            ]
        },
        "title": "Multiscale representation of genomic signals",
        "type": "dataset"
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    {
        "URL": "https://github.com/chipstewart/Spanner",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    19
                ]
            ]
        },
        "title": "",
        "type": "dataset"
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    {
        "URL": "https://github.com/mojones/AfterParty2",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    5
                ]
            ]
        },
        "title": "",
        "type": "dataset"
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    {
        "URL": "https://github.com/larisa-soldatova/HELO",
        "issued": {
            "date-parts": [
                [
                    2013,
                    1,
                    2
                ]
            ]
        },
        "title": "HELO (HypothEsis and Law Ontology) as described in the paper \"Representation of probabilistic scientific knowledge\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bio2rdf/bio2rdf-mapping",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    16
                ]
            ]
        },
        "title": "A community resource to develop ontologies to map Bio2RDF to community developed ontologies",
        "type": "dataset"
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    {
        "URL": "https://github.com/SciLifeLab/bcbio-nextgen-deploy",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    19
                ]
            ]
        },
        "title": "Suite of scripts to automatically deploy nextgen pipeline",
        "type": "dataset"
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    {
        "URL": "https://github.com/aberer/RogueNaRok",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    5
                ]
            ]
        },
        "title": "A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lucmoreau/ProvToolbox",
        "issued": {
            "date-parts": [
                [
                    2011,
                    8,
                    30
                ]
            ]
        },
        "title": "Java library to create and convert W3C PROV data model representations",
        "type": "dataset"
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    {
        "URL": "https://github.com/adamewing/GRIPper",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    11
                ]
            ]
        },
        "title": "Find non-reference processed pseudogene insertions from discordant read pair mappings",
        "type": "dataset"
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    {
        "URL": "https://github.com/chapmanb/bcbio-nextgen",
        "issued": {
            "date-parts": [
                [
                    2013,
                    2,
                    6
                ]
            ]
        },
        "title": "Validated, scalable, community developed variant calling and RNA-seq analysis",
        "type": "dataset"
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    {
        "URL": "https://github.com/IlincaTudose/OntoQuery",
        "issued": {
            "date-parts": [
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                    2013,
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                    29
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            ]
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        "title": "",
        "type": "dataset"
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    {
        "URL": "https://github.com/lgatto/CambRlogo",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    8
                ]
            ]
        },
        "title": "The code behind the CambR logo",
        "type": "dataset"
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    {
        "URL": "https://github.com/rossant/galry-benchmarks",
        "issued": {
            "date-parts": [
                [
                    2013,
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                    27
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            ]
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        "title": "",
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    {
        "URL": "https://github.com/pcm32/FASTLipid",
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                    2013,
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                    17
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            ]
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        "title": "",
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    {
        "URL": "https://github.com/peterdesmet/vascan-data-paper",
        "issued": {
            "date-parts": [
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                    7,
                    19
                ]
            ]
        },
        "title": "Data paper for the Database of Vascular Plants of Canada (VASCAN)",
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    },
    {
        "URL": "https://github.com/mojones/blobsplorer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    1
                ]
            ]
        },
        "title": "javascript tool for exploring taxonomically-annotated blob plots and selecting points",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DmitryBaranovskiy/raphael",
        "issued": {
            "date-parts": [
                [
                    2008,
                    9,
                    2
                ]
            ]
        },
        "title": "JavaScript Vector Library",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/compmem/desolver",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    24
                ]
            ]
        },
        "title": "Genetic function optimization via differential evolution in Python.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/timothyv/Physiological-Log-Extraction-for-Modeling--PhLEM--Toolbox",
        "issued": {
            "date-parts": [
                [
                    2011,
                    7,
                    18
                ]
            ]
        },
        "title": "PhLEM is a Matlab toolbox written to extract physiological recordings during MRI scanning and estimate the signal phases so that they can be used as a covariate in your general linear model (GLM) for functional brain imaging.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ffi/ffi",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8,
                    5
                ]
            ]
        },
        "title": "Ruby FFI",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/VarioML/VarioML",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    1
                ]
            ]
        },
        "title": "supporting the integration, federation, and exchange of Variation Data ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cmungall/obo-scripts",
        "issued": {
            "date-parts": [
                [
                    2010,
                    3,
                    6
                ]
            ]
        },
        "title": "standalone perl scripts for hacking obo files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/imagejs/imagejs.github.com",
        "issued": {
            "date-parts": [
                [
                    2011,
                    12,
                    23
                ]
            ]
        },
        "title": "Personalized, participated, pervasive, and reproducible image bioinformatics in the web browser",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mbl-cli/NetiNeti",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    10
                ]
            ]
        },
        "title": "scientific name finding machine learning tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/minillinim/SaSSY",
        "issued": {
            "date-parts": [
                [
                    2011,
                    3,
                    8
                ]
            ]
        },
        "title": "Short read assembler for illumina-type DNA sequence data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cplaisier/miRvestigator_standalone",
        "issued": {
            "date-parts": [
                [
                    2011,
                    4,
                    14
                ]
            ]
        },
        "title": "Stand alone version of miRvestigator HMM that takes as input a FASTA stlyed PSSM file.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/arq5x/nanopore-scripts",
        "issued": {
            "date-parts": [
                [
                    2014,
                    9,
                    12
                ]
            ]
        },
        "title": "Various scripts and recipes for working with nanopore data ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ruping/TRUP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    7
                ]
            ]
        },
        "title": "Tumor-specimen suited RNA-seq Unified Pipeline",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jamesware/APPRAISE",
        "issued": {
            "date-parts": [
                [
                    2014,
                    11,
                    24
                ]
            ]
        },
        "title": "A Bayesian framework for the analysis and interpretation of rare genetic variants",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tanghaibao/jcvi",
        "issued": {
            "date-parts": [
                [
                    2010,
                    12,
                    1
                ]
            ]
        },
        "title": "Python utility libraries on genome assembly, annotation and comparative genomics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openpencil/regeval",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    15
                ]
            ]
        },
        "title": "A systematic evaluation of high-dimensional, ensemble based regression for exploring large model spaces in microbiome analyses.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/shpakoo/YAP",
        "issued": {
            "date-parts": [
                [
                    2012,
                    2,
                    7
                ]
            ]
        },
        "title": "Yet Another Pipeline",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/btjaden/Rockhopper",
        "issued": {
            "date-parts": [
                [
                    2014,
                    11,
                    6
                ]
            ]
        },
        "title": "For computational analysis of bacterial RNA-seq data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/CREBP/SRA",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    21
                ]
            ]
        },
        "title": "Project based at the Bond University Center for Research in Evidence-Based Practice (CREBP) with the aim of drastically reducing the time to construct a Systematic Review.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sje30/g2chvc",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    16
                ]
            ]
        },
        "title": "Genes to Cognition: Hippocampus vs Cortex project",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PacificBiosciences/pbdagcon",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    4
                ]
            ]
        },
        "title": "A sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JeroenSmaers/evomap",
        "issued": {
            "date-parts": [
                [
                    2014,
                    12,
                    7
                ]
            ]
        },
        "title": "R package for evolutionary mapping of continuous traits",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Ensembl/ensembl-rest",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    13
                ]
            ]
        },
        "title": "Language agnostic RESTful data access to Ensembl data over HTTP",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Caged/d3-tip",
        "issued": {
            "date-parts": [
                [
                    2012,
                    1,
                    7
                ]
            ]
        },
        "title": "d3 tooltips",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kbroman/qtlcharts",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    28
                ]
            ]
        },
        "title": "R/qtlcharts: An R package for interactive QTL graphics",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mloop/kdiff-type1-error-rate",
        "issued": {
            "date-parts": [
                [
                    2014,
                    11,
                    3
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LifeWatchINBO/norms-for-data-use",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    17
                ]
            ]
        },
        "title": "Norms for data use and publication",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LifeWatchINBO/vis-inland-occurrences",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    28
                ]
            ]
        },
        "title": "Dataset: VIS - Fishes in inland waters in Flanders, Belgium",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LifeWatchINBO/vis-estuarine-occurrences",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    4
                ]
            ]
        },
        "title": "Dataset: VIS - Fishes in estuarine waters in Flanders, Belgium",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MG-RAST/MG-RAST-Tools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    20
                ]
            ]
        },
        "title": "Repository of script tools, examples, and contributed code for using the MG-RAST API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/SCAU-AnimalGenetics/GPOPSIM",
        "issued": {
            "date-parts": [
                [
                    2014,
                    10,
                    6
                ]
            ]
        },
        "title": "a simulation tool for pedigree, phenotypes, and genome data, with a varity of population and genome structures and trait genetic architectures.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/claczny/VizBin",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    25
                ]
            ]
        },
        "title": "Repository of our application for human-augmented binning",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/TheSEED/RASTtk-Distribution",
        "issued": {
            "date-parts": [
                [
                    2014,
                    9,
                    22
                ]
            ]
        },
        "title": "KBase distribution module for RASTtk",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kbase/genome_annotation",
        "issued": {
            "date-parts": [
                [
                    2014,
                    5,
                    16
                ]
            ]
        },
        "title": "The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service components.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/counsyl/hgvs",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    22
                ]
            ]
        },
        "title": "HGVS variant name parsing and generation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GenomeRef/SoftwareDevTracking",
        "issued": {
            "date-parts": [
                [
                    2014,
                    9,
                    26
                ]
            ]
        },
        "title": "A site to track software development efforts for using the full GRC assemblies",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/anbena/4p",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    24
                ]
            ]
        },
        "title": "Parallel Processing of Polymorphism Panels",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/morrislab/phylosub",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    4
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/andrej-fischer/cloneHD",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    3
                ]
            ]
        },
        "title": "High-definition reconstruction of clonal composition from next-generation sequencing data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/raphael-group/THetA",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    16
                ]
            ]
        },
        "title": "Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. Please note that the latest release is now called THetA2.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/atofigh/hotmix",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    27
                ]
            ]
        },
        "title": "HOT mixture model of cancer progression",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/evogytis/fluB",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    23
                ]
            ]
        },
        "title": "Investigating the (co)evolution of reassorting influenza B lineages.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/apolitis/eif3",
        "issued": {
            "date-parts": [
                [
                    2014,
                    9,
                    27
                ]
            ]
        },
        "title": "Data and scripts to model eIF3 from MS data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/apolitis/ms_benchmark",
        "issued": {
            "date-parts": [
                [
                    2014,
                    9,
                    27
                ]
            ]
        },
        "title": "Benchmark for the sampling procedure used in the Mass Spec paper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/InstitutoDOr/FriendENGINE",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    29
                ]
            ]
        },
        "title": "FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback  processing package, already available on the NITRC repository",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/guillaumelobet/rhizoponics",
        "issued": {
            "date-parts": [
                [
                    2015,
                    1,
                    5
                ]
            ]
        },
        "title": "Script and blue prints for the Rhizoponic setup",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/PIRCImagingTools/sfDM",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    23
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/kmhernan/Publications",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    29
                ]
            ]
        },
        "title": "Repository for scripts associated with a publication",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/davidbryantlowry/panicumhalliiqtlmapping",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    21
                ]
            ]
        },
        "title": "Panicum hallii genetic mapping",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/JFP-Laboratory/mBio-2015",
        "issued": {
            "date-parts": [
                [
                    2014,
                    12,
                    30
                ]
            ]
        },
        "title": "Contains files from Pombert et al. (2015) mBio 6(1):e02400-14",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/limno/illumitag",
        "issued": {
            "date-parts": [
                [
                    2014,
                    5,
                    8
                ]
            ]
        },
        "title": "Pipeline for analyzing 16S rRNA Illumina paired-end amplicon sequencing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Vityay/DWAC-Seq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    20
                ]
            ]
        },
        "title": "Dynamic Window Approach for Copy Number analysis using Sequencing data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Molmed/Berglund-Lindqvist-2013",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    19
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/beamandrew/BNN",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    7
                ]
            ]
        },
        "title": "Bayesian Neural Networks",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/evoeco/radtools",
        "issued": {
            "date-parts": [
                [
                    2014,
                    9,
                    25
                ]
            ]
        },
        "title": "RAD-Seq tools",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/grofte/NAMI",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    25
                ]
            ]
        },
        "title": "GUI-based Python program for thermal shift assay data analysis and interpretation",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/DrLiang/FastGCN",
        "issued": {
            "date-parts": [
                [
                    2014,
                    12,
                    10
                ]
            ]
        },
        "title": "FastGCN for gene co-expression network",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zhengxwen/SNPRelate",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    8
                ]
            ]
        },
        "title": "R package: parallel computing toolset for relatedness and principal component analysis of SNP data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/josephhughes/HCVtoolbox",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    18
                ]
            ]
        },
        "title": "Tools and scripts used in various HCV projects",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bramzandbelt/exgauss",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    8
                ]
            ]
        },
        "title": "Simple toolbox for fitting the ex-Gaussian distribution to response time data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pcingola/BigDataScript",
        "issued": {
            "date-parts": [
                [
                    2013,
                    3,
                    3
                ]
            ]
        },
        "title": "BigDataScript: Scirpting language for big data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ocisse/Pneumocystis_comparative",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    11
                ]
            ]
        },
        "title": "Pneumocystis comparative analysis",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bbarker/COBRAscripts",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    27
                ]
            ]
        },
        "title": "Collection(s) of scripts mostly built around the COBRA Toolbox.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/camwebb/tree-of-trees",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    24
                ]
            ]
        },
        "title": "Megatree construction from component trees, associated with phylomatic",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/sebmate/OntoImportSuite",
        "issued": {
            "date-parts": [
                [
                    2014,
                    12,
                    12
                ]
            ]
        },
        "title": "The \"OntoImportSuite\" is a set of proof-of-concept tools to extract and process heterogeneous data from clinical system, like the electronic medical record. This data can be mapped and transformed to match a set of common data elements, which will then be exported into a target system (i2b2) for research purposes. The system uses OWL ontologies to store information about the source and target systems and the mapping and transformation knowledge. The OWL ontologies are then translated into SQL scripts to perform the data integration on the database level.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/emarinier/pollux",
        "issued": {
            "date-parts": [
                [
                    2014,
                    11,
                    4
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/dhimmel/elevcan",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    8
                ]
            ]
        },
        "title": "Elevation and Cancer Incidence",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brwnj/seqanno",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    12
                ]
            ]
        },
        "title": "Retrieves read counts originating at a given genomic sequence and allows further characterization.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/agordon/fastx_toolkit",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    8
                ]
            ]
        },
        "title": "FASTA/FASTQ pre-processing programs",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ship561/sampled-ensemble-neutrality",
        "issued": {
            "date-parts": [
                [
                    2014,
                    11,
                    3
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nrzabet/ChIPseqProfile",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    17
                ]
            ]
        },
        "title": "R scripts for the http://arxiv.org/abs/1404.5544 paper",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MattNolanLab/Ramsden_MEC",
        "issued": {
            "date-parts": [
                [
                    2014,
                    10,
                    12
                ]
            ]
        },
        "title": "Registration pipeline for Allen Brain Atlas data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/oleg-alexandrov/projects",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    22
                ]
            ]
        },
        "title": "A place to keep track of minor scripts and useful stuff to not rewrite them each time",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lduvaux/Duvaux_et_al_2014",
        "issued": {
            "date-parts": [
                [
                    2014,
                    4,
                    3
                ]
            ]
        },
        "title": "Copy number variation and speciation in Pea Aphid. A collaboration with Ludovic Duvaux <l.duvaux@sheffield.ac.uk>.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/cambDI/camb",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    2
                ]
            ]
        },
        "title": "chemistry aware model builder",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/isidroc/FingerprintCalculator",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    5
                ]
            ]
        },
        "title": "Morgan Fingerprint Calculator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gburleigh/MatrixConverter",
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        "title": "Evaluation tool",
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    {
        "URL": "https://github.com/GregoryFaust/samblaster",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    11
                ]
            ]
        },
        "title": "samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lomereiter/sambamba",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    28
                ]
            ]
        },
        "title": "Tools for working with SAM/BAM data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fizquierdo/perpetually-updated-trees",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    8
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/stamatak/Parsimonator-1.0.2",
        "issued": {
            "date-parts": [
                [
                    2011,
                    6,
                    29
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rcsb/proteinfeatureview",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    28
                ]
            ]
        },
        "title": "The Protein Feature View - a SVG library for visualising protein annotations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/Jfortin1/shinyMethyl",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    23
                ]
            ]
        },
        "title": "Interactive visualization of 450k methylation data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/shinyMethyl",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    3
                ]
            ]
        },
        "title": "Interactive visualization of 450k methylation data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/macmanes/pero_transcriptome",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    23
                ]
            ]
        },
        "type": "dataset"
    },
    {
        "URL": "https://github.com/GeneMANIA/genemania",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    30
                ]
            ]
        },
        "title": "GeneMANIA helps you predict the function of your favourite genes and gene sets.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/genemania",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    16
                ]
            ]
        },
        "title": "GeneMANIA helps you predict the function of your favourite genes and gene sets.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jjgao/bridgedb.cytoscape",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    18
                ]
            ]
        },
        "title": "BridgeDb App for Cytoscape 3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/bridgedb.cytoscape",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    13
                ]
            ]
        },
        "title": "BridgeDb App for Cytoscape 3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/StoreyLab/subSeq",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    26
                ]
            ]
        },
        "title": "Subsampling of high-throughput sequencing count data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tfshibata/Burkholderia_RPE67_stats",
        "issued": {
            "date-parts": [
                [
                    2014,
                    5,
                    11
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mebbert/VariantToolChest",
        "issued": {
            "date-parts": [
                [
                    2013,
                    8,
                    10
                ]
            ]
        },
        "title": "VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and help improve existing tools. VTC currently provides two powerful tools: (1) SetOperator for performing powerful set operations; and (2) VarStats for various statistics on VCF files.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ctSkennerton/minced",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    18
                ]
            ]
        },
        "title": "Mining CRISPRs in Environmental Datasets",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/khturner/metaRNA-seq",
        "issued": {
            "date-parts": [
                [
                    2013,
                    9,
                    18
                ]
            ]
        },
        "title": "Custom scripts for creating and annotating multispecies bacterial metagenomes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/gpernelle/iGyne",
        "issued": {
            "date-parts": [
                [
                    2014,
                    4,
                    21
                ]
            ]
        },
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jpuritz/dDocent",
        "issued": {
            "date-parts": [
                [
                    2013,
                    10,
                    8
                ]
            ]
        },
        "title": "a bash pipeline for ddRAD sequencing",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wwood/metagenomic_mincer",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    7
                ]
            ]
        },
        "title": "Metagenomic simulator that can simulate multiple related communities",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/minillinim/sammy",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    20
                ]
            ]
        },
        "title": "Stupidly simple short read simulator",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/minillinim/GroopM_test_data",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    20
                ]
            ]
        },
        "title": "Data used for validating GroopM",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/minillinim/taintedSwallow",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    30
                ]
            ]
        },
        "title": "Parse nucmer output to create contig associations",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NeuralEnsemble/libNeuroML",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    16
                ]
            ]
        },
        "title": "This package provides Python libNeuroML, for working with neuronal models specified in NeuroML ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LEMS/pylems",
        "issued": {
            "date-parts": [
                [
                    2012,
                    5,
                    14
                ]
            ]
        },
        "title": "LEMS interpreter implemented in Python",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jsonpickle/jsonpickle",
        "issued": {
            "date-parts": [
                [
                    2009,
                    12,
                    10
                ]
            ]
        },
        "title": "Python library for serializing any arbitrary object graph into JSON. It can take almost any Python object and turn the object into JSON. Additionally, it can reconstitute the object back into Python.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/LEMS/jLEMS",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    10
                ]
            ]
        },
        "title": "Java Interpreter for the Low Entropy Model Specification language",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/openworm/CElegansNeuroML",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    4
                ]
            ]
        },
        "title": "NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NeuroML/org.neuroml.model",
        "issued": {
            "date-parts": [
                [
                    2012,
                    10,
                    11
                ]
            ]
        },
        "title": "NeuroML v2 Java API",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NeuroML/jNeuroML",
        "issued": {
            "date-parts": [
                [
                    2012,
                    12,
                    18
                ]
            ]
        },
        "title": "For more details see http://www.neuroml.org/neuroml2.php",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/fangly/AmpliCopyrighter",
        "issued": {
            "date-parts": [
                [
                    2012,
                    9,
                    14
                ]
            ]
        },
        "title": "CopyRighter",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/wikipathways/cytoscape-wikipathways-app",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    16
                ]
            ]
        },
        "title": "WikiPathways app for Cytoscape to open and access pathways from WikiPathways",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/cytoscape-wikipathways-app",
        "issued": {
            "date-parts": [
                [
                    2014,
                    5,
                    27
                ]
            ]
        },
        "title": "WikiPathways app for Cytoscape to open and access pathways from WikiPathways",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/idekerlab/KEGGscape",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    11
                ]
            ]
        },
        "title": "Cytoscape plugin for reading KEGG Pathway files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/KEGGscape",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    18
                ]
            ]
        },
        "title": "Cytoscape plugin for reading KEGG Pathway files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RBVI/enhancedGraphics",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
                    9
                ]
            ]
        },
        "title": "App to add enhanced node graphics to Cytoscape 3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/enhancedGraphics",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    10
                ]
            ]
        },
        "title": "App to add enhanced node graphics to Cytoscape 3",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/RBVI/setsApp",
        "issued": {
            "date-parts": [
                [
                    2013,
                    6,
                    5
                ]
            ]
        },
        "title": "A Cytoscape 3 App to create and operate on sets of CyNodes and CyEdges",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/setsApp",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    10
                ]
            ]
        },
        "title": "A Cytoscape 3 App to create and operate on sets of CyNodes and CyEdges",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/BaderLab/EnrichmentMapApp",
        "issued": {
            "date-parts": [
                [
                    2013,
                    4,
                    23
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/EnrichmentMapApp",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    17
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mozack/abra",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    7
                ]
            ]
        },
        "title": "Assembly Based ReAligner",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/topsoil/patternCNV",
        "issued": {
            "date-parts": [
                [
                    2014,
                    1,
                    6
                ]
            ]
        },
        "title": "a versatile tool for detecting copy number changes from exome-seq data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/tadKeys/sparqlgraph",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    20
                ]
            ]
        },
        "title": "SPARQLGraph - Visual Query Builder for Biological RDF Databases",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/zd1/telseq",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    27
                ]
            ]
        },
        "title": "A software for calculating telomere length",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/bioperl/Bio-Community",
        "issued": {
            "date-parts": [
                [
                    2011,
                    11,
                    30
                ]
            ]
        },
        "title": "Modules for community biology",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jfmeadow/Meadow_etal_Phones",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    7
                ]
            ]
        },
        "title": "Analysis of bacteria on phones and fingers. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ollyburren/vseams",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    14
                ]
            ]
        },
        "title": "Variant set enrichment analysis (of association summary statistics) using multivariate sampling",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ollyburren/macd",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    8
                ]
            ]
        },
        "title": "simple perl interface to running a set of jobs on a compute farm. Oprimised for SGE",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/idekerlab/pangia3",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    6
                ]
            ]
        },
        "title": "PanGIA 3.x which is compatible with Cytoscape 3.x",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/pangia3",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    13
                ]
            ]
        },
        "title": "PanGIA 3.x which is compatible with Cytoscape 3.x",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AndersenLab/COPASutils",
        "issued": {
            "date-parts": [
                [
                    2014,
                    6,
                    3
                ]
            ]
        },
        "title": "An R package for reading, cleaning, processing, and plotting COPAS BIOSORT data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/AndersenLab/COPASutils-data",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    3
                ]
            ]
        },
        "title": "Example data for the COPASutils R package",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/szpiech/selscan",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    24
                ]
            ]
        },
        "title": "Haplotype based scans for selection",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jensengroup/fragbuilder",
        "issued": {
            "date-parts": [
                [
                    2013,
                    12,
                    2
                ]
            ]
        },
        "title": "fragbuilder is a tool to create, setup and analyze QM calculations on peptides.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/nedaz/cola",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    18
                ]
            ]
        },
        "title": "Modular and Configurable Optimal Sequence Alignment Tool",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/slzhao/ExonDel",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    12
                ]
            ]
        },
        "title": "ExonDel is a tool designed specially to efficiently detect exon deletions.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mpc-bioinformatics/pia",
        "issued": {
            "date-parts": [
                [
                    2013,
                    11,
                    14
                ]
            ]
        },
        "title": "PIA - Protein Inference Algorithms",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mpc-bioinformatics/bacterial-proteogenomic-pipeline",
        "issued": {
            "date-parts": [
                [
                    2014,
                    5,
                    15
                ]
            ]
        },
        "title": "The Bacterial Proteogenomic Pipeline",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/praveeniisc/ABS-Scan",
        "issued": {
            "date-parts": [
                [
                    2014,
                    8,
                    20
                ]
            ]
        },
        "title": "Alanine binding site scanning mutagenesis for evaluting the contribution of individual residues at the binding site towards small-molecule ligand recognition",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/F1000Research/ABS-Scan",
        "issued": {
            "date-parts": [
                [
                    2014,
                    8,
                    26
                ]
            ]
        },
        "title": "Alanine binding site scanning mutagenesis for evaluting the contribution of individual residues at the binding site towards small-molecule ligand recognition",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/lisandracady/DivA",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    3
                ]
            ]
        },
        "title": "Detection of Non-homologous and Very Divergent Regions in Protein Sequence Alignments",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MulletLab/qtl",
        "issued": {
            "date-parts": [
                [
                    2014,
                    5,
                    19
                ]
            ]
        },
        "title": "R/qtl: A QTL mapping environment",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/MulletLab/exHet_Supplement",
        "issued": {
            "date-parts": [
                [
                    2014,
                    7,
                    25
                ]
            ]
        },
        "title": "Example script and simulation data to use the Truong and McCormick et al. 2014 variable heterozygosity model.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/NIF-au/TissueStack",
        "issued": {
            "date-parts": [
                [
                    2012,
                    3,
                    20
                ]
            ]
        },
        "title": "Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/rii-mango/Papaya",
        "issued": {
            "date-parts": [
                [
                    2012,
                    6,
                    17
                ]
            ]
        },
        "title": "A pure JavaScript medical research image viewer. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/aces/brainbrowser",
        "issued": {
            "date-parts": [
                [
                    2014,
                    3,
                    12
                ]
            ]
        },
        "title": "Web-based visualization tools for neurological data.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/veg/idepi",
        "issued": {
            "date-parts": [
                [
                    2011,
                    9,
                    14
                ]
            ]
        },
        "title": "IDentify EPItopes",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/ged-lab/2013-khmer-counting",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    29
                ]
            ]
        },
        "title": "Paper code: \"These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure\"",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    19
                ]
            ]
        },
        "title": "",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/daler/metaseq",
        "issued": {
            "date-parts": [
                [
                    2012,
                    4,
                    5
                ]
            ]
        },
        "title": "Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/pysam-developers/pysam",
        "issued": {
            "date-parts": [
                [
                    2014,
                    2,
                    5
                ]
            ]
        },
        "title": "Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. ",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/daler/gffutils",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    12
                ]
            ]
        },
        "title": "GFF and GTF file manipulation and interconversion",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/HelloWorldCN/RapidMic",
        "issued": {
            "date-parts": [
                [
                    2013,
                    5,
                    30
                ]
            ]
        },
        "type": "dataset"
    },
    {
        "URL": "https://github.com/4ndr01d3/biosual",
        "issued": {
            "date-parts": [
                [
                    2012,
                    11,
                    23
                ]
            ]
        },
        "title": "HTML5 framework for bioinformatics visualization components",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/brentp/pyfasta",
        "issued": {
            "date-parts": [
                [
                    2010,
                    7,
                    14
                ]
            ]
        },
        "title": "fast, memory-efficient, pythonic (and command-line) access to fasta sequence files",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/jamescasbon/PyVCF",
        "issued": {
            "date-parts": [
                [
                    2011,
                    10,
                    30
                ]
            ]
        },
        "title": "A Variant Call Format reader for Python.",
        "type": "dataset"
    },
    {
        "URL": "https://github.com/smilefreak/selectionTools",
        "issued": {
            "date-parts": [
                [
                    2013,
                    7,
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                    11,
                    19
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                    10
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                    31
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                    31
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            ]
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        "title": "Analysis of the data from the human connectome with SPM",
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        "URL": "https://github.com/LibourelLab/BiofloSoftware",
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            ]
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            ]
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                    12,
                    19
                ]
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        "title": "Data submission templates that capture metadata about the pathogen/vector isolate characteristics in an organized, clear, and consistent format. Mapping to terms from other data standards initiatives, including the Genomic Standards Consortium’s minimal information (MIxS), NCBI’s BioSample/BioProjects checklists and the Ontology for Biomedical Investigations (OBI) are provided.",
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            ]
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                    2013,
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            ]
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        "title": "Distributed String Mining Framework",
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        "title": "R-package for the detection and annotation of focal CNAs",
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        "title": "an open-source Java library to parse and validate FASTA formatted sequences",
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                    26
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            ]
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                    13
                ]
            ]
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        "title": "Perl script designed to study somatic variability in microsatellites using exome sequencing",
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                    24
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                    9
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        "title": "Specifications of SAM/BAM and related high-throughput sequencing file formats",
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        "issued": {
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                    5,
                    20
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        "title": "Program to encode binary files to DNA sequences with embedded error correction",
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                    3,
                    21
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        "title": "Regulatory motif discovery tool.",
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                    16
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                    9,
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        "title": "Multi-genome alignment contaminant screen for high-throughput sequence data.",
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                    5
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        "title": "Fast Principal Component Analysis of Large-Scale Genome-Wide Data",
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        "title": "Large scale Blast Score Ratio (BSR) analysis",
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                    25
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                    29
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        "title": "Analyze a mutant library based on the results from Sanger sequencing some selected clones",
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                    12
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        "title": "A python script for computing TCID50 using the Reed-Muench formula",
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                    6
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        "title": "Region of interest image analysis tool for Stratford and Thompson 2014",
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        "title": "A Python implementation of Jerome Friedman's Multivariate Adaptive Regression Splines",
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        "URL": "https://github.com/userbz/DeMix",
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        "title": "DeMix workflow for peptide identification",
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        "title": "Scripts developed for supporting predator runs in avida",
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        "URL": "https://github.com/G-Node/Datajongleur",
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        "title": "implementation of Four-Russians algorithms for RNA folding",
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        "URL": "https://github.com/armintoepfer/5-virus-mix",
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        "title": "Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences",
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        "title": "Djurfeldt M, Davison AP, Eppler JM (2014) \"Efficient generation of connectivity in neuronal networks from simulator-independent descriptions\"",
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        "URL": "https://github.com/msbrogli/sdm",
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        "title": "Implementation of Sparse Distributed Memory created by Pentti Kanerva in 1988.",
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        "URL": "https://github.com/baoe/AlignGraph",
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        "title": "Algorithm for secondary de novo genome assembly guided by closely related references",
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        "title": "",
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        "title": "Implementation of some deep learning algorithms.",
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        "title": "SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.",
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        "URL": "https://github.com/genome/gms-core",
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        "title": "core modules used by the GMS",
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        "URL": "https://github.com/qingzhanggithub/medline-collaboration-datasets",
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        "title": "Training and test sets for collaboration prediction from MEDLINEarticle",
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        "title": "",
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        "URL": "https://github.com/gregcaporaso/cloaked-octo-ninja",
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                    4,
                    16
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        "title": "Comparative analysis of high-level OTU picking protocols",
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        "URL": "https://github.com/SheffieldML/GPmat",
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        "title": "Matlab implementations of Gaussian processes and other machine learning tools.",
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        "URL": "https://github.com/chrisamiller/copyCat",
        "issued": {
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                    23
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        "title": "a parallel R package for detecting copy-number alterations from short sequencing reads",
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                    7
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        "title": "Vespucci: A system for building annotated databases of nascent transcripts",
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        "URL": "https://github.com/khturner/Tn-seq",
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        "URL": "https://github.com/CompEvol/sampled-ancestors",
        "issued": {
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                    18
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            ]
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        "title": " Enables MCMC with sampled ancestor trees",
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        "URL": "https://github.com/ImperialCollegeLondon/EpiCollectplus",
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                    12,
                    1
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        "title": "The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later and MySQL 5.5 or later.",
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        "URL": "https://github.com/ImperialCollegeLondon/EcPlusAndroid",
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                    14
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        "type": "dataset"
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        "URL": "https://github.com/yiq/SubcloneSeeker",
        "issued": {
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                    5,
                    4
                ]
            ]
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        "title": "Computational Framework to reconstructing tumor clone structures",
        "type": "dataset"
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        "URL": "https://github.com/rhentofs/summit",
        "issued": {
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                    9,
                    25
                ]
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        "title": "Strand-based Mixture Modeling of protein-DNA Interactions",
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        "URL": "https://github.com/rhentofs/sictin",
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            "date-parts": [
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                    2013,
                    9,
                    25
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            ]
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        "title": "Rapid footprinting of massively parallel sequencing data",
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        "title": "Code for SNPest - A probabilistic graphical model for estimating genotypes",
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        "URL": "https://github.com/jakob-skou-pedersen/phy",
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                    10
                ]
            ]
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        "title": "C++ library offering data structures and algorithms for workings with DFGs, SCFGs, and phylogenetic models. Also offering several applications, such as EvoFold, dfgEval, and dfgTrain.",
        "type": "dataset"
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        "URL": "https://github.com/takaho/snpexp",
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                    5,
                    27
                ]
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        "title": "Allele frequency counter with BAM file and VCF file",
        "type": "dataset"
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        "URL": "https://github.com/Rtasseff/robustFourierSeries",
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            "date-parts": [
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                    2013,
                    4,
                    29
                ]
            ]
        },
        "title": "Python 2.7 module for robust estimation of a Fourier Series, and methods for estimating periodic signals in data.",
        "type": "dataset"
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        "URL": "https://github.com/Rtasseff/gpdPerm",
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                    5,
                    23
                ]
            ]
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        "title": "improved permutation p-value estimates, python port from originally published matlab code",
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        "URL": "https://github.com/Rtasseff/oscillator",
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                    4,
                    29
                ]
            ]
        },
        "title": "Various python2.7 modules for estimating oscillator properties from periodic time course data",
        "type": "dataset"
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    {
        "URL": "https://github.com/rOpenHealth/ClinicalCodes",
        "issued": {
            "date-parts": [
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                    2013,
                    11,
                    1
                ]
            ]
        },
        "title": "An online clinical codes repository to improve validity and reproducability of medical database research",
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    {
        "URL": "https://github.com/rOpenHealth/rpubmed",
        "issued": {
            "date-parts": [
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                    1,
                    27
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            ]
        },
        "title": "Tools for extracting and processing Pubmed and Pubmed Central records.",
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        "URL": "https://github.com/hughshanahan/RAzureEssentials",
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                    4
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        "title": "A variety of codes ",
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        "URL": "https://github.com/andrewjpage/snp_sites",
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        "title": "A Better Sequencing Simulator for Metagenomics",
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                    27
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        "title": "files for Trimming paper",
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        "issued": {
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                    31
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        "URL": "https://github.com/Comp-Bio-Group/Parallel-META",
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        "title": "Metagenomic analysis pipeline",
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    {
        "URL": "https://github.com/jeffeaton/currpreg-hiv-trends",
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                    31
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        "title": "Automatic segmentation of electron microscopy volumes",
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                    21
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        "title": "perl script to subset a fastq file. ",
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        "title": "Alignment-Based Fungal Gene Prediction method",
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        "title": "Evolution of aging Java code used in \"Effects of Extrinsic Mortality on the Evolution of Aging: A Stochastic Modeling Approach\"",
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        "title": "Strain/species identification in metagenomes using genome-specific markers",
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        "title": "ITK Article on Open Science for Frontier in Neuroinformatics 2013",
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        "title": "ABCpower: simulation code used for Stocks, Siol, Lascoux & De Mita (2014). PLoS ONE",
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                    19
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        "title": "GDSC Single Molecule Light Microscopy ImageJ Plugins",
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                    10,
                    31
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                    8,
                    23
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        "title": "A tool that generates a network of metagenomic samples positioned and with links according to the number of taxa shared",
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                    26
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                    20
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        "title": "This repository includes all code and supplementary material generated by the UCLA Cardiac Modeling Group",
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                    30
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        "title": "A machine learning system for supporting the triage of biological literature.",
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                    10,
                    25
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            ]
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        "title": "Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009).  Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85",
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                    3
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        "title": "Detailed description of linux commands for the creation of false positive corrected KOIN peak files using TF ChIP-seq datasets",
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                    12
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        "title": "Generalized Transfer Entropy program for model-free connectivity analysis.",
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                    30
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        "title": "SIDNO: Stable Isotopes of Dissolved Nitrous Oxide",
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    {
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                    7
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        "title": "supporting scripts for manuscript Liu, Morgan et al. (2014) High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline. Genetics. doi:10.1534/genetics.114.161653",
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        "URL": "https://github.com/ansell/chembl-webapp",
        "issued": {
            "date-parts": [
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                    3,
                    5
                ]
            ]
        },
        "title": "Linked Data server for Chembl using the QueryAll library",
        "type": "dataset"
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    {
        "URL": "https://github.com/dsexton2/Mercury-Pipeline",
        "issued": {
            "date-parts": [
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                    27
                ]
            ]
        },
        "title": "IpipeV2 + Mercury",
        "type": "dataset"
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    {
        "URL": "https://github.com/malaria-atlas-project/generic-mbg",
        "issued": {
            "date-parts": [
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                    15
                ]
            ]
        },
        "title": "Wraps spatiotemporal models for count data in shell commands",
        "type": "dataset"
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    {
        "URL": "https://github.com/malaria-atlas-project/Explorer",
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                    3
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            ]
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        "title": "",
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        "URL": "https://github.com/srhartono/Globulator",
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                    8
                ]
            ]
        },
        "title": "Software that uses imageJ to automatically quantify RNA in milk slides stained with Acridine Orange.",
        "type": "dataset"
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    {
        "URL": "https://github.com/ucdavis-bioinformatics/assemblathon2-analysis",
        "issued": {
            "date-parts": [
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                    10,
                    24
                ]
            ]
        },
        "title": "collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)",
        "type": "dataset"
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    {
        "URL": "https://github.com/jfass/compass",
        "issued": {
            "date-parts": [
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                    11,
                    18
                ]
            ]
        },
        "title": "Perl / R scripts to COMpare a DNA sequence ASSembly to a trusted reference sequence",
        "type": "dataset"
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    {
        "URL": "https://github.com/richardbeare/mbwss",
        "issued": {
            "date-parts": [
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                    7,
                    12
                ]
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        "title": "Marker based watershed scalper",
        "type": "dataset"
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    {
        "URL": "https://github.com/PointCloudLibrary/pcl",
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                    12
                ]
            ]
        },
        "title": "Point Cloud Library (PCL)",
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    {
        "URL": "https://github.com/winteram/IAT",
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        "title": "Online IAT",
        "type": "dataset"
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    {
        "URL": "https://github.com/michaelvandam/elixys",
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            "date-parts": [
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                    4
                ]
            ]
        },
        "title": "Elixys Radiochemistry Software",
        "type": "dataset"
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    {
        "URL": "https://github.com/franapoli/pyleaf",
        "issued": {
            "date-parts": [
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                    12,
                    28
                ]
            ]
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        "title": "A Python pipeline management system",
        "type": "dataset"
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    {
        "URL": "https://github.com/antonbarty/cheetah",
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            "date-parts": [
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                    7
                ]
            ]
        },
        "title": "",
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    {
        "URL": "https://github.com/FlyCourtship/FlySongSegmenter",
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                    10,
                    24
                ]
            ]
        },
        "title": "Signal in, sine and pulse song out",
        "type": "dataset"
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    {
        "URL": "https://github.com/gfairchild/pyHarmonySearch",
        "issued": {
            "date-parts": [
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                    29
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            ]
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        "title": "pyHarmonySearch is a pure Python implementation of the harmony search (HS) global optimization algorithm.",
        "type": "dataset"
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    {
        "URL": "https://github.com/CIGUGent/TRAPID",
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                    10,
                    1
                ]
            ]
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        "title": "TRAPID source",
        "type": "dataset"
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    {
        "URL": "https://github.com/vadimzalunin/crammer",
        "issued": {
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                    3,
                    30
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            ]
        },
        "title": "Reference-based compression of SRA data",
        "type": "dataset"
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    {
        "URL": "https://github.com/HGGM-LIM/jclustering",
        "issued": {
            "date-parts": [
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                    8,
                    29
                ]
            ]
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        "title": "jClustering is a dynamic image clustering framework for ImageJ. It provides a public API for implementing new clustering algorithms and several implementations.",
        "type": "dataset"
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    {
        "URL": "https://github.com/blaa/PyGene",
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                    7,
                    25
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        "title": "PyGene project pretty much main repository",
        "type": "dataset"
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    {
        "URL": "https://github.com/malaria-atlas-project/mbgw-clean",
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                    10
                ]
            ]
        },
        "title": "Cleaned version of mbg-world",
        "type": "dataset"
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    {
        "URL": "https://github.com/allisonbmccoy/smart-summarization",
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                    11,
                    15
                ]
            ]
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        "title": "SMART Patient Summarization App",
        "type": "dataset"
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    {
        "URL": "https://github.com/jimmccusker/twc-healthdata",
        "issued": {
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                    8,
                    28
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            ]
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        "title": "Code and metadata for sharing health data.",
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    {
        "URL": "https://github.com/ITKTools/ITKTools",
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                    14
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            ]
        },
        "title": "Practical command line tools based on the ITK",
        "type": "dataset"
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    {
        "URL": "https://github.com/Molmed/Nordlund-Backlin-2013",
        "issued": {
            "date-parts": [
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                    9,
                    10
                ]
            ]
        },
        "title": "Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia",
        "type": "dataset"
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    {
        "URL": "https://github.com/dbottomly/pod",
        "issued": {
            "date-parts": [
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                    10
                ]
            ]
        },
        "title": "Tools for patient-specific expression outlier detection",
        "type": "dataset"
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    {
        "URL": "https://github.com/pfond/PFOND",
        "issued": {
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                    8
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            ]
        },
        "title": "Portal for Families Overcoming Neurodevelopmental Disorders (PFOND)",
        "type": "dataset"
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    {
        "URL": "https://github.com/rpietro/GlocalRegistry",
        "issued": {
            "date-parts": [
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                    3
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        "title": "Describes reproducible data quality monitoring for a cardiac registry",
        "type": "dataset"
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    {
        "URL": "https://github.com/obigriffith/Rtoolbox",
        "issued": {
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                    19
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            ]
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        "title": "Modeling precision treatment of breast cancer",
        "type": "dataset"
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    {
        "URL": "https://github.com/wanpinglee/SmithWaterman",
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                    14
                ]
            ]
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        "title": "",
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    {
        "URL": "https://github.com/ekg/rzmblr",
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                    14
                ]
            ]
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        "title": "Read aZeMBLeR, pairwise-alignment based overlap graph generation from local alignments",
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]