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mapping COVID signs and symptoms to the MP (and HPO) #3406

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sbello opened this issue Jun 7, 2021 · 3 comments
Open

mapping COVID signs and symptoms to the MP (and HPO) #3406

sbello opened this issue Jun 7, 2021 · 3 comments
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COVID-19 new terms related to COVID-19

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@sbello
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sbello commented Jun 7, 2021

Umbrella ticket for work we've been doing to map MP (and HPO) terms to published COVID-19 signs and symptoms

Google doc: https://docs.google.com/spreadsheets/d/1qK-tPhZuaTpBk3C2GrcAJli8zheBIiO195pVx043EMk/edit?usp=sharing

Readme doc: https://docs.google.com/document/d/1JCwmVcn7zvj8C0ea4oa0G5g351YNsIemgVE6xriea4w/edit?usp=sharing

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The Google doc includes more than just the MP-HPO-COVID-19 mappings. The mappings are on the tab labeled "Terms by system". Terms may appear more than once in the spreadsheet if the term falls under multiple systems.

Spreadsheet was started on July 8, 2020 and is still being revised.

New terms created based on this review may be entered in separate tickets with the "COVID-19" label

@sbello sbello added the COVID-19 new terms related to COVID-19 label Jun 7, 2021
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sbello commented Jun 7, 2021

COVIDnewMPterms.xlsx
Snapshot of data as of June 7, 2020. Tab MPterms_nodup6_7_21 has a non redundant list of MP terms mapped to COVID-19 signs/symptoms with associated SKOS:Match type where available.

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sbello commented Jun 8, 2021

newCOVIDrelatedMPterms.xlsx

Snapshot of new COVID-19 related MP terms added as of June 7, 2021.

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sbello commented Feb 15, 2022

FIles have been pushed to https://github.com/mgijax/mammalian-phenotype-ontology/tree/main/mappings and to https://github.com/mapping-commons/mh_mapping_initiative
Future updates will be pushed to both locations

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