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NAMESPACE
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NAMESPACE
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useDynLib(
pomp,
bspline_basis,
periodic_bspline_basis,
bspline_basis_function,
systematic_resampling,
euler_model_simulator,
euler_model_density,
lookup_in_table,
load_stack_incr,load_stack_decr,
SSA_simulator,
R_Euler_Multinom,D_Euler_Multinom,R_GammaWN,
mif_update,
mif2_computations,
pfilter_computations,
simulation_computations,
iterate_map,traj_transp_and_copy,
apply_probe_data,apply_probe_sim,
probe_marginal_setup,probe_marginal_solve,
probe_acf,probe_ccf,
probe_nlar,
synth_loglik,
pomp_desolve_setup,pomp_desolve_takedown,
pomp_vf_eval,
do_partrans,
do_rprocess,
do_dprocess,
do_rmeasure,
do_dmeasure,
do_rprior,
do_dprior,
do_skeleton,
do_init_state
)
import(methods)
importFrom(graphics,plot,par,abline,pairs,matplot,box,axis,mtext,
points,polygon,lines,plot.default,legend,hist,rect,text,title)
importFrom(utils,head)
importFrom(grDevices,rgb,dev.interactive)
importFrom(stats,simulate,time,coef,logLik,window,fitted,
dnorm,runif,sd,var,cov,cor,median,density,
spec.pgram,rnorm,weighted.mean,optim,
.lm.fit,setNames,kernel,quantile)
importFrom(digest,digest)
importFrom(mvtnorm,dmvnorm,rmvnorm)
importFrom(subplex,subplex)
importFrom(deSolve,ode)
importFrom(nloptr,nloptr)
importFrom(coda,mcmc,mcmc.list)
exportClasses(
pomp,
pfilterd.pomp,
mif,mifList,
mif2d.pomp,mif2List,
pmcmc,pmcmcList,
traj.matched.pomp,
nlfd.pomp,
probed.pomp,probe.matched.pomp,
spect.pomp,spect.matched.pomp,
abc,abcList,
Csnippet
)
exportMethods(
pomp,
plot,show,print,coerce,summary,logLik,window,"$",
pompLoad,pompUnload,
dprocess,rprocess,rmeasure,dmeasure,init.state,skeleton,
dprior,rprior,
obs,partrans,coef,"coef<-",
time,"time<-",timezero,"timezero<-",
simulate,pfilter,
eff.sample.size,cond.logLik,
states,trajectory,
particles,mif,mif2,continue,
pred.mean,pred.var,filter.mean,filter.traj,
conv.rec,values,
bsmc2,bsmc,pmcmc,abc,nlf,
covmat,
traj.match.objfun,
probe.match.objfun,
spect,probe,probe.match,
traj.match
)
S3method(as.data.frame,pomp)
S3method(as.data.frame,pfilterd.pomp)
S3method(as.data.frame,probed.pomp)
export(
bake,stew,freeze,
Csnippet,
reulermultinom,
deulermultinom,
rgammawn,
euler.sim,
discrete.time.sim,
onestep.sim,
onestep.dens,
gillespie.sim,
mvn.diag.rw,mvn.rw,
mvn.rw.adaptive,
rw.sd,
sobol,
sobolDesign,
sliceDesign,
profileDesign,
bspline.basis,
periodic.bspline.basis,
parmat,
logmeanexp,
probe.mean,
probe.median,
probe.var,
probe.sd,
probe.period,
probe.quantile,
probe.acf,
probe.ccf,
probe.nlar,
probe.marginal,
sannbox,
spect.match,
pompExample
)