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incubator/format/definition.md: Multiple variants #23

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phillipeloher opened this issue Jul 16, 2018 · 1 comment
Open

incubator/format/definition.md: Multiple variants #23

phillipeloher opened this issue Jul 16, 2018 · 1 comment

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@phillipeloher
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Are multiple variants allowed for the same reported isomiR sequence?

For example, isomiR Sequence TGGGGCGGAGCTTCCGGAGGC has the following possible locations just within miRBase22.
MIMAT0015058_2&hsa-miR-3180-3p&offsets|0|-1
MIMAT0018178_1&hsa-miR-3180&offsets|0|+2
MIMAT0015058_1&hsa-miR-3180-3p&offsets|0|-1
MIMAT0015058&hsa-miR-3180-3p&offsets|0|-1

If so, what would the recommendation of the above be? Should folks generating the GFF3 file be encouraged to report all four (including the 0|-1 and 0|+2 offsets) above within Column 9->Attributes->variant?

@lpantano
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Moving to: miRTop/mirGFF3#2

@miRTop miRTop locked as resolved and limited conversation to collaborators Jul 16, 2018
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