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michaelkyu · Dec 8, 2018 · 3bf6422 · 3bf6422
1 parent de4e141
commit 3bf6422
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Showing 4 changed files with 6 additions and 4 deletions.
diff --git a/ddot/Ontology.py b/ddot/Ontology.py
@@ -3808,7 +3808,7 @@ def to_NdexGraph(self,
         if name is not None:
             G.set_name(name)
         if description is not None:
-            G.set_network_attribute('Description', description)
+            G.set_network_attribute('description', description)
 
         if style:
             import ndex.beta.toolbox as toolbox
@@ -4150,7 +4150,7 @@ def f(x):
 
                 G = nx_to_NdexGraph(G_nx)
                 G.set_name('%s supporting network for %s' % (name, t))
-                G.set_network_attribute('Description', '%s supporting network for %s' % (name, t))
+                G.set_network_attribute('description', '%s supporting network for %s' % (name, t))
                 G.set_network_attribute('Main Feature', main_feature)
                 for f in features:
 

diff --git a/ddot/config.py b/ddot/config.py
@@ -38,3 +38,4 @@ def get_passthrough_style():
 MONARCH_DISEASE_GENE_URL = 'http://public.ndexbio.org/v2/network/bce041f4-f739-11e8-aaa6-0ac135e8bacf'
 MONARCH_DISEASE_GENE_SLIM_URL = 'http://public.ndexbio.org/v2/network/aba9e837-f73b-11e8-aaa6-0ac135e8bacf'
 FANGO_URL = "http://public.ndexbio.org/v2/network/0fb9fec3-f772-11e8-aaa6-0ac135e8bacf"
+FANGO_DATA_URL = "http://public.ndexbio.org/#/network/84898ca0-fa98-11e8-8438-0ac135e8bacf"
diff --git a/examples/Load_example_datasets.ipynb b/examples/Load_example_datasets.ipynb
@@ -201,7 +201,8 @@
     "ExecuteTime": {
      "end_time": "2018-12-07T22:16:41.167388Z",
      "start_time": "2018-12-07T22:16:35.553893Z"
-    }
+    },
+    "collapsed": true
    },
    "outputs": [],
    "source": [

diff --git a/examples/Make_disease_gene_ontologies.ipynb b/examples/Make_disease_gene_ontologies.ipynb
@@ -1741,7 +1741,7 @@
    "source": [
     "# Download a table containing multiple types of gene-gene interactions, which were preformatted and uploaded to NDEx for the Fanconi Anemia example.\n",
     "from ndex.networkn import NdexGraph\n",
-    "G_ndex = NdexGraph(server='http://test.ndexbio.org', uuid='9412e430-02f1-11e8-bd69-0660b7976219')\n",
+    "G_ndex = NdexGraph(server=ddot.parse_ndex_server(ddot.FANGO_DATA_URL), uuid=ddot.parse_ndex_uuid(ddot.FANGO_DATA_URL))\n",
     "G = ddot.NdexGraph_to_nx(G_ndex)\n",
     "gene_network_data = ddot.nx_edges_to_pandas(G)\n",
     "gene_network_data.index.names = ['Gene1', 'Gene2']\n",