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michaelkyu · Dec 8, 2018 · 7f5776a · 7f5776a
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Showing 2 changed files with 9 additions and 5 deletions.
diff --git a/examples/Make_disease_gene_ontologies.ipynb b/examples/Make_disease_gene_ontologies.ipynb
@@ -60,8 +60,9 @@
     }
    },
    "source": [
-    "# Set the NDEx server and the user account/password\n",
-    "* Replace with your own NDEx user account"
+    "# Set username and password on the Network Data Exchange (NDEx).\n",
+    "* It is strongly recommended that you create a free account on NDEx in order to keep track of your own ontologies.\n",
+    "* Note that there are two NDEx servers: the main server at http://public.ndexbio.org/ and a test server for prototyping your code at http://test.ndexbio.org (also aliased as http://dev2.ndexbio.org). Each server requires a separate user account. Because the main server contains networks from publications, we recommend that you use an account on the test server while you become familiar with DDOT"
    ]
   },
   {
@@ -76,8 +77,11 @@
    },
    "outputs": [],
    "source": [
-    "ndex_server = 'http://test.ndexbio.org'\n",
-    "ndex_user, ndex_pass = '<replace>', '<replace>'"
+    "# Note: change the server to http://public.ndexbio.org, if this is where you created your NDEx account\n",
+    "ndex_server = 'http://test.ndexbio.org' \n",
+    "\n",
+    "# Set the NDEx server and the user account (replace with your own account)\n",
+    "ndex_user, ndex_pass = '<enter your username>', '<enter your account password>'"
    ]
   },
   {

diff --git a/examples/Process_the_Gene_Ontology.ipynb b/examples/Process_the_Gene_Ontology.ipynb
@@ -43,7 +43,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Set NDEx username and password\n",
+    "# Set username and password on the Network Data Exchange (NDEx).\n",
     "* It is strongly recommended that you create a free account on NDEx in order to keep track of your own ontologies.\n",
     "* Note that there are two NDEx servers: the main server at http://public.ndexbio.org/ and a test server for prototyping your code at http://test.ndexbio.org (also aliased as http://dev2.ndexbio.org). Each server requires a separate user account. Because the main server contains networks from publications, we recommend that you use an account on the test server while you become familiar with DDOT"
    ]