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Occassionally workflows fail when using read_* WDL methods #691

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MattMcL4475 opened this issue Aug 11, 2023 · 0 comments
Open

Occassionally workflows fail when using read_* WDL methods #691

MattMcL4475 opened this issue Aug 11, 2023 · 0 comments

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@MattMcL4475
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MattMcL4475 commented Aug 11, 2023 •
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Root cause could be blobfuse. Update blob-csi-driver to latest version could help.

Bad output 'ScatterIntervalList.interval_count': Failed to read_int("/cromwell-executions/WholeGenomeGermlineSingleSample/de3bf569-c285-40eb-936c-761c4c935c9d/call-BamToGvcf/VariantCalling/4048d437-5cd4-4b7e-a1fc-c850a81fa332/call-ScatterIntervalList/execution/stdout") (reason 1 of 1): [Attempted 1 time(s)] - IOException: Could not read from /cromwell-executions/WholeGenomeGermlineSingleSample/de3bf569-c285-40eb-936c-761c4c935c9d/call-BamToGvcf/VariantCalling/4048d437-5cd4-4b7e-a1fc-c850a81fa332/call-ScatterIntervalList/execution/stdout: /cromwell-executions/WholeGenomeGermlineSingleSample/de3bf569-c285-40eb-936c-761c4c935c9d/call-BamToGvcf/VariantCalling/4048d437-5cd4-4b7e-a1fc-c850a81fa332/call-ScatterIntervalList/execution/stdout
@MattMcL4475 MattMcL4475 added follow up Additional work related to previous issue. Please link issue in description. and removed follow up Additional work related to previous issue. Please link issue in description. labels Aug 11, 2023
@MattMcL4475 MattMcL4475 mentioned this issue Aug 11, 2023
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@MattMcL4475 MattMcL4475 changed the title Update blob-csi-driver to latest version Occassionally workflows fail when using read_* WDL methods Aug 11, 2023
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