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azuredeploy.json
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azuredeploy.json
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{
"$schema": "https://schema.management.azure.com/schemas/2019-04-01/deploymentTemplate.json#",
"contentVersion": "1.0.0.0",
"parameters": {
"textAnalyticsForHealthServiceName": {
"type": "String",
"defaultValue": "[concat('ta4h', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure TextAnalytics Service name. Has to be unique."
}
},
"clinicalDocumentsStorageName": {
"type": "String",
"defaultValue": "[concat('ta4hstorage', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure StorageAccount name. Has to be unique."
}
},
"fhirDocumentsStorageName": {
"type": "String",
"defaultValue": "[concat('fhirstorage', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure StorageAccount name. Has to be unique."
}
},
"visualizerSiteName": {
"type": "String",
"defaultValue": "[concat('ta4h-fhir-vis-', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure WebApp site name. Has to be unique."
}
},
"visualizerFunctionAppName": {
"type": "String",
"defaultValue": "[concat('ta4h-fhir-functions-', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure FunctionApp name. Has to be unique."
}
},
"fhirDocumentsImportFunctionAppName": {
"type": "String",
"defaultValue": "[concat('ta4h-fhir-import-functions-', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure Functions name. Has to be unique."
}
},
"healthDataServicesWorkspace": {
"type": "String",
"defaultValue": "[concat('fhirapi', uniqueString(utcNow('F')))]",
"metadata":{
"description": "Azure Health Data Services workspace. Has to be unique."
}
},
"webappSku": {
"type": "string",
"defaultValue": "P2V2",
"allowedValues": [
"B1",
"S1",
"P1V2",
"P2V2"
],
"metadata": {
"description": "Describes plan's pricing tier and instance size. Check details at https://azure.microsoft.com/en-us/pricing/details/app-service/"
}
},
"functionAppSku": {
"type": "string",
"defaultValue": "Consumption (Serverless)",
"allowedValues": [
"Consumption (Serverless)",
"Functions Premium"
],
"metadata": {
"description": "Describes plan's pricing tier"
}
},
"textAnalyticsSku": {
"type": "string",
"defaultValue": "S",
"allowedValues": [
"S",
"F0"
],
"metadata": {
"description": "Describes plan's pricing tier"
}
},
"repoUrl": {
"type": "string",
"defaultValue": "https://github.com/microsoft/Health-AI-Blueprints-TA4HVisualizer.git",
"metadata": {
"description": "The URL for the GitHub repository that contains the project to deploy."
}
},
"functionPackageUrl": {
"type": "string",
"defaultValue": "https://github.com/microsoft/Health-AI-Blueprints-TA4HVisualizer/blob/main/azure_functions/af_v28.zip?raw=true",
"metadata": {
"description": "The URL for the GitHub repository that contains the project to deploy."
}
},
"branch": {
"type": "string",
"defaultValue": "main",
"metadata": {
"description": "The branch of the GitHub repository to use."
}
}
},
"variables": {
"skuCode": "[parameters('webappSku')]",
"hostingPlanNameLinux": "[concat('plan-linux-', parameters('visualizerSiteName'))]",
"visualizerStorageAccount": "[resourceId('Microsoft.Storage/storageAccounts', parameters('clinicalDocumentsStorageName'))]",
"fhirStorageAccount": "[resourceId('Microsoft.Storage/storageAccounts', parameters('fhirDocumentsStorageName'))]",
"textAnalyticsForHealthServiceId": "[resourceId('Microsoft.CognitiveServices/accounts', parameters('textAnalyticsForHealthServiceName'))]",
"linuxFxVersion": "NODE|16.13"
},
"resources": [
{
"type": "Microsoft.CognitiveServices/accounts",
"apiVersion": "2021-10-01",
"name": "[parameters('textAnalyticsForHealthServiceName')]",
"location": "[resourceGroup().location]",
"sku": {
"name": "[parameters('textAnalyticsSku')]"
},
"kind": "TextAnalytics",
"properties": {
"apiProperties": {},
"customSubDomainName": "[parameters('textAnalyticsForHealthServiceName')]",
"publicNetworkAccess": "Enabled"
}
},
{
"type": "Microsoft.Storage/storageAccounts",
"apiVersion": "2021-06-01",
"name": "[parameters('clinicalDocumentsStorageName')]",
"location": "[resourceGroup().location]",
"sku": {
"name": "Standard_LRS",
"tier": "Standard"
},
"kind": "Storage",
"properties": {
"minimumTlsVersion": "TLS1_0",
"allowBlobPublicAccess": true,
"networkAcls": {
"bypass": "AzureServices",
"virtualNetworkRules": [],
"ipRules": [],
"defaultAction": "Allow"
},
"supportsHttpsTrafficOnly": true,
"encryption": {
"services": {
"file": {
"keyType": "Account",
"enabled": true
},
"blob": {
"keyType": "Account",
"enabled": true
}
},
"keySource": "Microsoft.Storage"
}
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices",
"apiVersion": "2021-08-01",
"name": "[concat(parameters('clinicalDocumentsStorageName'), '/default')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('clinicalDocumentsStorageName'))]"
],
"sku": {
"name": "Standard_LRS",
"tier": "Standard"
},
"properties": {
"cors": {
"corsRules": [
{
"allowedOrigins": [
"*"
],
"allowedMethods": [
"GET",
"DELETE",
"HEAD",
"MERGE",
"POST",
"OPTIONS",
"PUT",
"PATCH"
],
"maxAgeInSeconds": 200,
"exposedHeaders": [
"content-length"
],
"allowedHeaders": [
"*"
]
}
]
},
"deleteRetentionPolicy": {
"enabled": false
}
}
},
{
"type": "Microsoft.Storage/storageAccounts",
"apiVersion": "2021-06-01",
"name": "[parameters('fhirDocumentsStorageName')]",
"location": "[resourceGroup().location]",
"sku": {
"name": "Standard_LRS",
"tier": "Standard"
},
"kind": "Storage",
"properties": {
"minimumTlsVersion": "TLS1_0",
"allowBlobPublicAccess": true,
"networkAcls": {
"bypass": "AzureServices",
"virtualNetworkRules": [],
"ipRules": [],
"defaultAction": "Allow"
},
"supportsHttpsTrafficOnly": true,
"encryption": {
"services": {
"file": {
"keyType": "Account",
"enabled": true
},
"blob": {
"keyType": "Account",
"enabled": true
}
},
"keySource": "Microsoft.Storage"
}
}
},
{
"apiVersion": "2018-02-01",
"name": "[variables('hostingPlanNameLinux')]",
"type": "Microsoft.Web/serverfarms",
"location": "[resourceGroup().location]",
"kind": "linux",
"sku": {
"Name": "[variables('skuCode')]"
},
"properties": {
"name": "[variables('hostingPlanNameLinux')]",
"numberOfWorkers": "1",
"reserved": true
}
},
{
"type": "Microsoft.Web/sites",
"apiVersion": "2021-02-01",
"name": "[parameters('visualizerSiteName')]",
"location": "[resourceGroup().location]",
"kind": "app",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('clinicalDocumentsStorageName'))]",
"[resourceId('Microsoft.Web/serverfarms', variables('hostingPlanNameLinux'))]"
],
"properties": {
"name": "[parameters('visualizerSiteName')]",
"siteConfig": {
"linuxFxVersion": "[variables('linuxFxVersion')]",
"alwaysOn": true,
"appSettings": [
{
"name": "STORAGE_ACCOUNT_NAME",
"value": "[parameters('clinicalDocumentsStorageName')]"
},
{
"name": "STORAGE_KEY",
"value": "[listKeys(variables('visualizerStorageAccount'), '2019-04-01').keys[0].value]"
}
]
},
"serverFarmId": "[resourceId('Microsoft.Web/serverfarms', variables('hostingPlanNameLinux'))]",
"clientAffinityEnabled": false
},
"resources": [
{
"type": "sourcecontrols",
"apiVersion": "2018-02-01",
"name": "web",
"location": "[resourceGroup().location]",
"dependsOn": [
"[resourceId('Microsoft.Web/sites', parameters('visualizerSiteName'))]"
],
"properties": {
"repoUrl": "[parameters('repoUrl')]",
"branch": "[parameters('branch')]",
"isManualIntegration": true
}
}
]
},
{
"type": "Microsoft.Web/sites",
"apiVersion": "2021-02-01",
"name": "[parameters('visualizerFunctionAppName')]",
"location": "[resourceGroup().location]",
"dependsOn": [
"[resourceId('Microsoft.Web/serverfarms/', variables('hostingPlanNameLinux'))]"
],
"kind": "functionapp",
"properties": {
"serverFarmId": "[resourceId('Microsoft.Web/serverfarms/', variables('hostingPlanNameLinux'))]",
"reserved": false,
"isXenon": false,
"hyperV": false,
"siteConfig": {
"appSettings": [
{
"name": "medicaltextsstorage_STORAGE",
"value": "[concat('DefaultEndpointsProtocol=https;AccountName=', parameters('clinicalDocumentsStorageName'), ';AccountKey=', listKeys(variables('visualizerStorageAccount'), '2019-04-01').keys[0].value,';EndpointSuffix=core.windows.net')]"
},
{
"name": "fhirimportstorage_STORAGE",
"value": "[concat('DefaultEndpointsProtocol=https;AccountName=', parameters('fhirDocumentsStorageName'), ';AccountKey=', listKeys(variables('fhirStorageAccount'), '2019-04-01').keys[0].value,';EndpointSuffix=core.windows.net')]"
},
{
"name": "TA_API_KEY",
"value": "[listKeys(variables('textAnalyticsForHealthServiceId'),'2022-03-01').key1]"
},
{
"name": "TA_API_VERSION",
"value": "2022-07-01-preview"
},
{
"name": "TA_FHIR_API_VERSION",
"value": "4.0.1"
},
{
"name": "TA_FHIR_STRUCTURING_RESOURCE_NAME",
"value": "[parameters('textAnalyticsForHealthServiceName')]"
},
{
"name": "FUNCTIONS_EXTENSION_VERSION",
"value": "~4"
},
{
"name": "FUNCTIONS_WORKER_RUNTIME",
"value": "node"
},
{
"name": "WEBSITE_MOUNT_ENABLED",
"value": "1"
},
{
"name": "WEBSITE_RUN_FROM_PACKAGE",
"value": "[parameters('functionPackageUrl')]"
},
{
"name": "AzureWebJobsStorage",
"value": "[concat('DefaultEndpointsProtocol=https;AccountName=', parameters('clinicalDocumentsStorageName'), ';AccountKey=', listKeys(variables('visualizerStorageAccount'), '2019-04-01').keys[0].value,';EndpointSuffix=core.windows.net')]"
}
],
"numberOfWorkers": 1,
"linuxFxVersion": "NODE|14",
"alwaysOn": false,
"http20Enabled": false,
"functionAppScaleLimit": 200,
"minimumElasticInstanceCount": 1
},
"scmSiteAlsoStopped": false,
"clientAffinityEnabled": false,
"clientCertEnabled": false,
"clientCertMode": "Required",
"hostNamesDisabled": false,
"containerSize": 1536,
"dailyMemoryTimeQuota": 0,
"httpsOnly": false,
"redundancyMode": "None",
"storageAccountRequired": false
}
},
{
"type": "Microsoft.Web/sites",
"apiVersion": "2021-03-01",
"name": "[parameters('fhirDocumentsImportFunctionAppName')]",
"location": "[resourceGroup().location]",
"dependsOn": [
"[resourceId('Microsoft.Web/serverfarms/', variables('hostingPlanNameLinux'))]"
],
"kind": "functionapp",
"identity": {
"type": "SystemAssigned"
},
"properties": {
"enabled": true,
"serverFarmId": "[resourceId('Microsoft.Web/serverfarms/', variables('hostingPlanNameLinux'))]",
"reserved": false,
"isXenon": false,
"hyperV": false,
"siteConfig": {
"numberOfWorkers": 1,
"acrUseManagedIdentityCreds": false,
"alwaysOn": false,
"http20Enabled": false,
"functionAppScaleLimit": 200,
"minimumElasticInstanceCount": 0
},
"scmSiteAlsoStopped": false,
"clientAffinityEnabled": false,
"clientCertEnabled": false,
"clientCertMode": "Required",
"hostNamesDisabled": false,
"containerSize": 1536,
"dailyMemoryTimeQuota": 0,
"httpsOnly": false,
"redundancyMode": "None",
"storageAccountRequired": false,
"keyVaultReferenceIdentity": "SystemAssigned"
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices/containers",
"apiVersion": "2021-06-01",
"name": "[concat(parameters('clinicalDocumentsStorageName'), '/default/azure-webjobs-secrets')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('clinicalDocumentsStorageName'))]"
],
"properties": {
"immutableStorageWithVersioning": {
"enabled": false
},
"defaultEncryptionScope": "$account-encryption-key",
"denyEncryptionScopeOverride": false,
"publicAccess": "None"
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices/containers",
"apiVersion": "2021-06-01",
"name": "[concat(parameters('clinicalDocumentsStorageName'), '/default/azure-webjobs-hosts')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('clinicalDocumentsStorageName'))]"
],
"properties": {
"immutableStorageWithVersioning": {
"enabled": false
},
"defaultEncryptionScope": "$account-encryption-key",
"denyEncryptionScopeOverride": false,
"publicAccess": "None"
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices/containers",
"apiVersion": "2021-06-01",
"name": "[concat(parameters('clinicalDocumentsStorageName'), '/default/medical-texts-input')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('clinicalDocumentsStorageName'))]"
],
"properties": {
"immutableStorageWithVersioning": {
"enabled": false
},
"defaultEncryptionScope": "$account-encryption-key",
"denyEncryptionScopeOverride": false,
"publicAccess": "None"
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices/containers",
"apiVersion": "2021-06-01",
"name": "[concat(parameters('fhirDocumentsStorageName'), '/default/azure-webjobs-secrets')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('fhirDocumentsStorageName'))]"
],
"properties": {
"immutableStorageWithVersioning": {
"enabled": false
},
"defaultEncryptionScope": "$account-encryption-key",
"denyEncryptionScopeOverride": false,
"publicAccess": "None"
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices/containers",
"apiVersion": "2021-06-01",
"name": "[concat(parameters('fhirDocumentsStorageName'), '/default/azure-webjobs-hosts')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('fhirDocumentsStorageName'))]"
],
"properties": {
"immutableStorageWithVersioning": {
"enabled": false
},
"defaultEncryptionScope": "$account-encryption-key",
"denyEncryptionScopeOverride": false,
"publicAccess": "None"
}
},
{
"type": "Microsoft.Storage/storageAccounts/blobServices/containers",
"apiVersion": "2021-06-01",
"name": "[concat(parameters('fhirDocumentsStorageName'), '/default/fhir-import')]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', parameters('fhirDocumentsStorageName'))]"
],
"properties": {
"immutableStorageWithVersioning": {
"enabled": false
},
"defaultEncryptionScope": "$account-encryption-key",
"denyEncryptionScopeOverride": false,
"publicAccess": "None"
}
},
{
"type": "Microsoft.HealthcareApis/workspaces",
"apiVersion": "2021-06-01-preview",
"name": "[parameters('healthDataServicesWorkspace')]",
"location": "[resourceGroup().location]"
},
{
"type": "Microsoft.HealthcareApis/workspaces/fhirservices",
"apiVersion": "2021-06-01-preview",
"name": "[concat(parameters('healthDataServicesWorkspace'), '/ta4h')]",
"location": "[resourceGroup().location]",
"dependsOn": [
"[resourceId('Microsoft.HealthcareApis/workspaces', parameters('healthDataServicesWorkspace'))]"
],
"kind": "fhir-R4",
"properties": {
"accessPolicies": [],
"acrConfiguration": {
"loginServers": []
},
"authenticationConfiguration": {
"authority": "[concat('https://login.microsoftonline.com/',subscription().tenantId)]",
"audience": "[concat('https://', parameters('healthDataServicesWorkspace'), '-ta4h', '.fhir.azurehealthcareapis.com')]",
"smartProxyEnabled": false
},
"corsConfiguration": {
"origins": [],
"headers": [],
"methods": [],
"allowCredentials": false
},
"exportConfiguration": {}
}
}
]
}