utils.rst

Utility actions

Version info

In order to check the current version of MiXCR as usual one can use -v option:

> mixcr -v
MiXCR v2.1 (built Mon Feb 06 19:56:13 MSK 2017; rev=a9958cd; branch=release/v2.1)
RepSeq.IO v1.2.6 (rev=958e019)
MiLib v1.7.1 (rev=f6ccdbc)
Built-in V/D/J/C library: repseqio.v1.2

Library search path:
- built-in libraries
- /Users/dbolotin/.
- /Users/dbolotin/.mixcr/libraries

In order to check which version of MiXCR was used to build some vdjca/clns file:

> mixcr versionInfo file.vdjca
MagicBytes = MiXCR.VDJC.V06
MiXCR v1.8-SNAPSHOT (built Fri Jan 29 16:16:40 MSK 2016; rev=327c30c; branch=feature/mixcr_diff); MiLib v1.2 (rev=4f56782; branch=release/v1.2); MiTools v1.2 (rev=eb91603; branch=release/v1.2)

Merge alignments

Allows to merge multiple .vdjca files into a single one:

> mixcr mergeAlignments file1.vdjca file2.vdjca ... output.vdjca