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Issue when running mixcr exportPlots shmTrees #1519
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Hi, |
Hi, Thanks so much for your prompt reply! When using the develop version, I initially got the following error:
At the beginning of my bash run script, I added the following line: Thanks again! |
You did everything right. The error occurred due to you system configurations, not MiXCR. You did the right thing to fix it with |
Hi,
I am using MiXCR 4.6.0 and adapted this tutorial to build lineage trees from bulk BCR-seq data without UMIs (https://mixcr.com/mixcr/guides/ig-trees-reconstruction/). All the commands worked except the last one, which exports lineage trees in a graphical format.
Here is the command I ran to obtain a plot for one of the trees:
mixcr exportPlots shmTrees -m /project/6002257/claumont/tilb/scripts/metadata/metadata.tsv --ids 1 --chains IGH --verbose /project/6002257/claumont/tilb/res/test1_vdj_wtree/trees/2_Om1.shmt /project/6002257/claumont/tilb/res/test1_vdj_wtree/figs/2_Om1_shm_trees.pdf
Here is the error I got (instead of the expected lineage tree plot):
I am not sure how to interpret this error nor what to do about it! Any guidance appreciated, thanks!
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