Skip to content

milescsmith/ViolinEnsemble

Repository files navigation

Build Status

ViolinEnsemble

Create violin plots of gene expression for multiple genes

Given a Seurat object and a list of genes, ViolinEnsemble will plot expression levels for each gene with the cells grouped by a provided variable (such as cell type or cluster identity). If the gene list provided is a table containing the columns "cluster" and "gene" (such as from FindAllClusters(), the genes will be grouped by the cluster with which they are associated.

As an example, here are the top 3 markers for each cluster in the dataset from Villani et al. Science 2017 paper Villani et.al. plot

About

Create violin plots of gene expression for multiple genes

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages