index.php

<?php
/**
 * The main template file.
 * @package Alien Ship
 * @since Alien Ship 0.1
 */

get_header(); ?>

	    <div id="main-row" class="row-fluid">
	    	<?php alienship_content_before(); ?>
    		<div id="content" role="main" class="span9">
 
			<?php if ( have_posts() ) : ?>

        <?php if ( of_get_option('alienship_content_nav_above') ) { alienship_content_nav( 'nav-above' ); } // display content nav above posts? ?>

        <?php if ( of_get_option('alienship_featured_posts') ) {
          if ( of_get_option('alienship_featured_posts_display_type',1) == "1" ) { alienship_featured_posts_slider(); 
            } else { alienship_featured_posts_grid(); }
          } // if (of_get_option('alienship_featured_posts') ) ?>

        <?php 
        /* Check to see if we should duplicate featured posts in the body
         *
         * Do not display */
        if ( of_get_option('alienship_featured_posts') && of_get_option('alienship_featured_posts_show_dupes') == "0" ) {
          $args = array(
            'tag__not_in' => array ( of_get_option('alienship_featured_posts_tag') ),
            'paged' => $paged
            );
          $query = new WP_Query( $args );

        } else {

          /* Duplicate featured posts (Show all posts) */
          $args = array(
            'post_status' => 'publish',
            'paged' => $paged
            );
          $query = new WP_Query( $args );
          
        } ?>

        <?php /* Start the Loop */ ?>

				<?php while ( have_posts() ) : the_post(); ?>
					<?php alienship_loop_before(); ?>
					<?php
						/* Include the Post-Format-specific template for the content.
						 * If you want to overload this in a child theme then include a file
						 * called content-___.php (where ___ is the Post Format name) and that will be used instead.
						 */
            $format = get_post_format();
            if ( false === $format )
            $format = 'standard';
						get_template_part( 'content', $format );
					?>
					<?php alienship_loop_after(); ?>
				<?php endwhile; ?>

        <?php if ( of_get_option('alienship_content_nav_below',1) ) { alienship_content_nav( 'nav-below' ); } // display content nav below posts? ?>
        
			<?php else : ?>

      <?php /* No results */ get_template_part( 'content', 'none' ); ?>

			<?php endif; ?>
				<?php alienship_content_after(); ?>
    		</div><!-- #content -->
    		<?php alienship_sidebar_before(); ?>
    		<div id="sidebar" class="span3">
    			<?php alienship_sidebar_inside_before(); ?>
    		<?php get_sidebar(); ?>
    		<?php alienship_sidebar_inside_after(); ?>
		</div><!-- #sidebar -->
		<?php alienship_sidebar_after(); ?>
    	</div><!-- .row-fluid -->
    <?php get_footer(); ?>