silvermanplot.R

library(fxl)

oldwd <- getwd()

if (require("here")) {
  setwd(paste(here::here("demo")))
}

koffarnus_et_al_mod <- KoffarnusEtAl2011
koffarnus_et_al_mod$facet <- ifelse(koffarnus_et_al_mod$ID < 40,
  "1",
  ifelse(koffarnus_et_al_mod$ID > 83,
    "3",
    "2"
  )
)

scr_plot(
  koffarnus_et_al_mod,
  aesthetics = var_map(
    x = X,
    y = ID,
    p = Code,
    facet = facet
  ),
  mai = c(
    0.0,
    0.0,
    0.35,
    0.0
  ),
  omi = c(
    0.725,
    0.725,
    0.0,
    0.0
  )
) |>
  scr_yoverride(
    list( # manually override y-axis and tick interval
      "1" = list(
        y0 = 0,
        y1 = 40,
        yticks = c(5, 10, 15, 20, 25, 30, 35)
      ),
      "2" = list(
        y0 = 40,
        y1 = 83,
        yticks = c(40, 45, 50, 55, 60, 65, 70, 75, 80)
      ),
      "3" = list(
        y0 = 82,
        y1 = 127,
        yticks = c(85, 90, 95, 100, 105, 110, 115, 120, 125)
      )
    ),
    ydelta = 5
  ) |>
  scr_ylabel("Participant Number", line = 3) |>
  scr_xoverride(
    var = c(0, 135),
    xdelta = 5,
    xticks = c(
      0, 10, 20, 30, 40, 50,
      60, 70, 80, 90, 100, 110,
      120, 130
    )
  ) |>
  scr_xlabel("Consecutive Work Day", line = 3) |>
  scr_points(
    cex = list(
      "0" = 1,
      "1" = 1,
      "2" = 0.5
    ),
    pch = list(
      "0" = 22,
      "1" = 22,
      "2" = 22
    ),
    fill = list( # override point marker colors (match FA conventions)
      "0" = "black",
      "1" = "white",
      "2" = rgb(.8,
        .8,
        .8,
        alpha = 0.75
      )
    ),
    color = list( # override point marker colors (match FA conventions)
      "0" = "transparent",
      "1" = "black",
      "2" = "transparent"
    )
  ) |>
  scr_label_facet(
    cex = 1.25,
    adj = 0,
    x = 1,
    labels = list( # list of labels to draw (will use assigned key for label)
      "1" = list(
        y = 41.5,
        label = "Unpaid Training (n = 39)"
      ),
      "2" = list(
        y = 84.5,
        label = "Paid Training (n = 42)"
      ),
      "3" = list(
        y = 128.5,
        label = "Contingent Paid Training (n = 42)"
      )
    )
  ) |>
  scr_legend(
    panel = "3",
    position = list(
      x = 60,
      y = 136
    ),
    adj = c(0, 0.5),
    legend = c(
      "Present: Positive",
      "Present: Negative",
      "Absent"
    ),
    col = c(
      "black",
      "black",
      "transparent"
    ),
    pt_bg = c(
      "white",
      "black",
      rgb(.8,
        .8,
        .8,
        alpha = 0.75
      )
    ),
    lty = NULL,
    pch = c(
      22,
      22,
      22
    ),
    bty = "n",
    cex = 1.5,
    pt_cex = c(1, 1, 0.5),
    horiz = TRUE,
    box_lty = 0
  )
  # |>
  #   scr_save(
  #     name = "../man/figures/silvermanfigure.svg",
  #     format = "svg",
  #     height = 11,
  #     width = 9
  #   ) |>
  # scr_save(
  #   name = "../man/figures/silvermanfigure.png",
  #   format = "png",
  #   units = "in",
  #   height = 11,
  #   res = 300,
  #   width = 9
  # )

setwd(oldwd)