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I may be misunderstanding this issue (I came here from #154). I was thinking of adding a sample_weight parameter, similar to what you see in scikit-learn, xgboost, catboost, lightgbm, etc... regression estimators. You would pass a column of sample weights along with your target variables, and features.
The use case is anytime you want to downweight some observations. This is common anytime you have different confidences in certain observations, such as if they're from a long time ago, or are just already rolled up in some way, so given rows represent different samples of data.
Please check if and how a cost matrix is supported in:
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