Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

How to get "holdout_AD_CN_2Yr15T_plus_UniqueScreening_ID_Hippocampus.h5" #16

Closed
YH2010 opened this issue Dec 7, 2021 · 1 comment
Closed

How to get "holdout_AD_CN_2Yr15T_plus_UniqueScreening_ID_Hippocampus.h5" #16

YH2010 opened this issue Dec 7, 2021 · 1 comment

Comments

@YH2010
Copy link

YH2010 commented Dec 7, 2021 •
edited
Loading

Could you please supply some detail on how to get the "holdout_AD_CN_2Yr15T_plus_UniqueScreening_ID_Hippocampus.h5" file, which is in "Beta Correlation.ipynb" script? Thank you very much.
@YH2010 YH2010 changed the title Could you describe in detail the process from the raw image to the HDF5 file How to get nmm_mask_rescaled.nii Dec 10, 2021
@YH2010 YH2010 changed the title How to get nmm_mask_rescaled.nii How to get "nmm_mask_rescaled.nii" Dec 10, 2021
@YH2010 YH2010 changed the title How to get "nmm_mask_rescaled.nii" How to get "holdout_AD_CN_2Yr15T_plus_UniqueScreening_ID_Hippocampus.h5" Dec 10, 2021
@derEitel
Copy link
Collaborator

The ADNIMerge table has a column that contains the hippocampus volume. You can store that into an HDF5 file or simple read it from the table, making sure that you match your patient IDs.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@derEitel @YH2010