-
Notifications
You must be signed in to change notification settings - Fork 303
131 lines (113 loc) · 4.02 KB
/
benchmark.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
name: FloPy benchmarks
on:
schedule:
- cron: '0 8 * * *' # run at 8 AM UTC (12 am PST)
jobs:
benchmark:
name: Benchmarks
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ 3.8, 3.9, "3.10", "3.11", "3.12" ]
exclude:
# avoid shutil.copytree infinite recursion bug
# https://github.com/python/cpython/pull/17098
- python-version: '3.8.0'
defaults:
run:
shell: bash -l {0}
timeout-minutes: 90
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: etc/environment.yml
cache-environment: true
cache-downloads: true
create-args: >-
python=${{ matrix.python-version }}
init-shell: >-
bash
powershell
- name: Install FloPy
run: pip install .
- name: Install Modflow executables
uses: modflowpy/install-modflow-action@v1
- name: Run benchmarks
working-directory: autotest
run: |
mkdir -p .benchmarks
pytest -v --durations=0 --benchmark-only --benchmark-json .benchmarks/${{ matrix.os }}_python${{ matrix.python-version }}.json --keep-failed=.failed
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Upload failed benchmark artifact
uses: actions/upload-artifact@v3
if: failure()
with:
name: failed-benchmark-${{ matrix.os }}-${{ matrix.python-version }}-${{ github.run_id }}
path: |
./autotest/.failed/**
- name: Upload benchmark result artifact
uses: actions/upload-artifact@v3
with:
name: benchmarks-${{ matrix.os }}-${{ matrix.python-version }}-${{ github.run_id }}
path: |
./autotest/.benchmarks/**/*.json
post_benchmark:
needs:
- benchmark
name: Process benchmark results
runs-on: ubuntu-latest
defaults:
run:
shell: bash
timeout-minutes: 10
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: 3.12
cache: 'pip'
cache-dependency-path: pyproject.toml
- name: Install Python dependencies
run: |
pip install --upgrade pip
pip install numpy pandas matplotlib seaborn
- name: Download all artifacts
uses: actions/download-artifact@v3
with:
path: ./autotest/.benchmarks
- name: Process benchmark results
run: |
artifact_json=$(gh api -X GET -H "Accept: application/vnd.github+json" /repos/modflowpy/flopy/actions/artifacts)
get_artifact_ids="
import json
import sys
from os import linesep
artifacts = json.load(sys.stdin, strict=False)['artifacts']
artifacts = [a for a in artifacts if a['name'].startswith('benchmarks-') and a['name'].split('-')[-1].isdigit()]
print(linesep.join([str(a['id']) for a in artifacts]))
"
echo $artifact_json \
| python -c "$get_artifact_ids" \
| xargs -I@ bash -c "gh api -H 'Accept: application/vnd.github+json' /repos/modflowpy/flopy/actions/artifacts/@/zip >> ./autotest/.benchmarks/@.zip"
zipfiles=( ./autotest/.benchmarks/*.zip )
if (( ${#zipfiles[@]} )); then
unzip -o './autotest/.benchmarks/*.zip' -d ./autotest/.benchmarks
fi
python ./scripts/process_benchmarks.py ./autotest/.benchmarks ./autotest/.benchmarks
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Upload benchmark results
uses: actions/upload-artifact@v3
with:
name: benchmarks-${{ github.run_id }}
path: |
./autotest/.benchmarks/*.csv
./autotest/.benchmarks/*.png