ragtag steps flag/getopts build out

[molikd]

No description provided.

[molikd]

https://github.com/malonge/RagTag

@tsimmonds do you think it'd be useful to allow the user to choose between Minimap2, Unimap, or Nucmer for ragtag polishing? or better just to default to something, also do any of these scaffolding options look useful? https://github.com/malonge/RagTag/wiki/scaffold and do any of these error correction options look useful? https://github.com/malonge/RagTag/wiki/correct

[github-actions]

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days

[molikd]

looking at the ragtag flags, really the only two we might be interested in is the inferred gap size, and the selection of which ragtag compatible aligner: unimap, minimap2, and nucmer.

[molikd]

consensus is that this is not needed, closing.