index.rst

Welcome to fwdpy's documentation!

Contents:

.. toctree::
   :maxdepth: 2

   README
   pages/changelog
   pages/todo
   pages/notes
   pages/rusers

Theoretical concepts

.. toctree::
   :maxdepth: 2

   pages/background

Important concepts for setting up simulations

.. toctree::
   :maxdepth: 2

   pages/popsizes
   pages/demography
   pages/regions
   examples/temporalSampling
   pages/summstats
   pages/slim
   pages/threads

Examples

.. toctree::
   :maxdepth: 2

   examples/BGS
   examples/views
   examples/windows
   examples/trajectories
   examples/copypops

Special topics

.. toctree::
   :maxdepth: 2

   pages/vareg

Plugins

.. toctree::
   :maxdepth: 2

   pages/plugins

Notes for people wanting to work with the code

.. toctree::
   :maxdepth: 2

   pages/code
   pages/extending

Functions and classes

.. automodule:: fwdpy.fwdpy
   :members:
   :show-inheritance:

.. automodule:: fwdpy.fitness
   :members:
   :show-inheritance:

.. automodule:: fwdpy.demography
   :members:
   :show-inheritance:

.. automodule:: fwdpy.matrix
   :members:
   :show-inheritance:

.. automodule:: fwdpy.slim
   :members:
   :show-inheritance:

.. automodule:: fwdpy.internal.internal
   :members:
   :show-inheritance:

.. automodule:: fwdpy.fwdpyio.fwdpyio
   :members:
   :show-inheritance:

.. automodule:: fwdpy.qtrait.qtrait
   :members:
   :show-inheritance:

.. automodule:: fwdpy.qtrait_mloc.qtrait_mloc
   :members:
   :show-inheritance:

Indices and tables

• :ref:`genindex`
• :ref:`modindex`
• :ref:`search`