#filter variants
Small script to filter variants based on their frequency.
User can use multiple frequencies by repeating the --keyword option.
If vcf file is not annotated the user can point to bgzip and tabix indexed sources to check annotation.
Right now only works with bg-zipped and tabix indexed 1000G vcf file.
##Installation
pip install filter-variants
or
>git clone https://github.com/moonso/filter_variants.git
>cd filter_variants
>python setup.py install
##Usage
Example files included:
filter_variants tests/fixtures/test.vcf --thousand_g tests/fixtures/small_1000G.vcf.gz