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Update loqusdb/build_models/variant.py
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Co-authored-by: Henrik Stranneheim <henrik.stranneheim@scilifelab.se>
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dnil and henrikstranneheim committed Mar 20, 2024
1 parent 4d137b7 commit 9a1ccf2
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2 changes: 1 addition & 1 deletion loqusdb/build_models/variant.py
Expand Up @@ -148,7 +148,7 @@ def build_variant(variant:cyvcf2.Variant, case_obj:Case, case_id:Optional[str]=N
Take a cyvcf2 formated variant line and return a models.Variant.
If criteria are not fulfilled, eg variant has no gt call or quality
If criteria are not fulfilled, eg variant has no GT call or quality.
is below gq threshold then return None.
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