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LRez supposes "-1" ending of the barcode in the BX tag of the bam file is specific to 10X genomics linked-reads data.
However, it seems that some mappers (such as EMA) add "-1" at the end of barcodes whatever the linked-read technology.
Be carefull : this does not issue any error... but results in all barcodes begin encoded in the same key value (so no indexing).
Could we handle better "-1" endings in LRez ?
Claire
The text was updated successfully, but these errors were encountered:
LRez supposes "-1" ending of the barcode in the BX tag of the bam file is specific to 10X genomics linked-reads data.
However, it seems that some mappers (such as EMA) add "-1" at the end of barcodes whatever the linked-read technology.
Be carefull : this does not issue any error... but results in all barcodes begin encoded in the same key value (so no indexing).
Could we handle better "-1" endings in LRez ?
Claire
The text was updated successfully, but these errors were encountered: