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Which types of genes should we allow in the GENCODE GTF file? #12

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dewyman opened this issue Apr 10, 2018 · 1 comment
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Which types of genes should we allow in the GENCODE GTF file? #12

dewyman opened this issue Apr 10, 2018 · 1 comment
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dewyman commented Apr 10, 2018 •
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Should we be filtering out things like snoRNAs, miRNA, etc. At first, my plan was to stick to protein coding genes and lncRNAs, but then I visited the GENCODE page and found out that there is an absurd number of biotypes.

https://www.gencodegenes.org/gencode_biotypes.html
@dewyman dewyman self-assigned this Apr 10, 2018
@dewyman dewyman added the question Further information is requested label Apr 10, 2018
@dewyman dewyman mentioned this issue Apr 13, 2018
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dewyman commented Oct 2, 2018

In the end, I dealt with this by applying an optional length filtering the database initialization step.

@dewyman dewyman closed this as completed Oct 2, 2018
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