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Currently, the functional_enrichment_analysis function allows performing Enrichr search only using GO, KEGG, and REACTOME.
In my case, none of them yielded good enough results, so I'd like to analyse functional enrichment with other available GSEApy datasets.
To me, it seems rather simple to add an opportunity to search through any of them by passing user-defined gene sets and dataset names into variables that will be transferred to the gp.enrichr() function (as it is almost done now), not just be confined to GO, KEGG, and REACTOME.
So, I'd be very glad to see these features in future, thanks again for the package!
The text was updated successfully, but these errors were encountered:
Hello once again =)
Currently, the
functional_enrichment_analysis
function allows performing Enrichr search only using GO, KEGG, and REACTOME.In my case, none of them yielded good enough results, so I'd like to analyse functional enrichment with other available GSEApy datasets.
To me, it seems rather simple to add an opportunity to search through any of them by passing user-defined gene sets and dataset names into variables that will be transferred to the
gp.enrichr()
function (as it is almost done now), not just be confined to GO, KEGG, and REACTOME.So, I'd be very glad to see these features in future, thanks again for the package!
The text was updated successfully, but these errors were encountered: