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zipped input files #110
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mOTUs supports fastq.gz files. From the manual:
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On the latest version: motus profile -s someFile_S1_L001_R1_001.fastq.gz 2023-02-17 14:49:09 Map reads to the marker gene database Number of detected lanes: 1 2023-02-17 14:49:09 Run bwa on lane 1 Error: file someFile_S1_L001_R1_001.fastq.gz is not a fastq file Unzipping and running works fine... |
Never mind. This was on me. I owe you a beer for jumping the gun :). |
Sounds good 🍺 :) |
This should support fastq.gz input files :).
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