Conda motus-3.0.1

[plmeta]

Hello,

I wonder if conda install is working now for version 3.0.1. I saw the package is already on conda. But it still installs version 1.0 when using it.

Thanks!

All the best,
pl

[AlessioMilanese]

Hello,

That's weird. Can you try to run:

 conda install -c bioconda/label/cf201901 motus 

[plmeta]

Hi, thanks for the quick reply. I think I found the issue. I am installing with a .yml file and there are some dependencies that forced motus to install a lower version.

[AlessioMilanese]

I see. i guess samtools or bwa, or maybe something related to metaSNV.
Is it working now?

[plmeta]

I haven't unfortunately. I managed to install 3.0.1 once but now I couldn't manage again. It is now version 2.0.1 with dependencies like blow. I tried also both py3.7 and py3.8.

[AlessioMilanese]

maybe create a new conda environment can help?
https://github.com/motu-tool/mOTUs/wiki/Installation#install-dependencies-with-conda

[plmeta]

Hi, finnally I made it to work.

python 3.8.1 + samtools 1.9 + bwa 0.1.17, then I am getting motus 3.0.1 by:
conda install -c bioconda motus=3.0.1

[AlessioMilanese]

Nice!

I know it can be messy with the different tool versions, and it's not completely under our control.
Thanks for cheking. I can point to this discussion if anyone gets the same problem!