This repo is the official implementation of our paper "MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score" accepted in EMNLP 2022.
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First install all requirements
$ pip install -r requirements.txt
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Then, download the MedCAT binary file from "https://github.com/CogStack/MedCAT"
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Update "UMLS_MedCAT_PATH" to your file path.
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Run the ipynb file
@inproceedings{kwon-etal-2022-medjex,
title = "{M}ed{JE}x: A Medical Jargon Extraction Model with {W}iki{'}s Hyperlink Span and Contextualized Masked Language Model Score",
author = "Kwon, Sunjae and
Yao, Zonghai and
Jordan, Harmon and
Levy, David and
Corner, Brian and
Yu, Hong",
booktitle = "Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing",
month = dec,
year = "2022",
address = "Abu Dhabi, United Arab Emirates",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2022.emnlp-main.805",
pages = "11733--11751"}