Fix upgrading packages from local sources which reference remotes

[richfitz]

With package spimalot, built as a tgz source package, which references several other packages via remotes, but which are installed from drat

> cfg <- didehpc::didehpc_config(cluster = "big",
+                                template = '32Core',
+                                cores = 32)
> obj <- didehpc::queue_didehpc(ctx, config = cfg, provision = "upgrade")
Loading context 54afdd1a4f7ea3df77344e01709aa29e
[ context   ]  54afdd1a4f7ea3df77344e01709aa29e
[ library   ]  sircovid, lubridate, coda, tidyr, viridisLite, orderly, vaultr, readxl, abind, here, mcstate, dust, spimalot
[ namespace ]
[ source    ]
Running installation script on cluster
  ,:\      /:.                                                                      
 //  \_()_/  \\
||   |    |   ||  CONAN THE LIBRARIAN
||   |    |   ||  Library:   Z:\Pablo\ncov-outputs-2\contexts\lib\windows\4.0
||   |____|   ||  Bootstrap: T:\conan\bootstrap\4.0
 \\  / || \  //   Cache:     Z:\Pablo\ncov-outputs-2\contexts\conan\cache/pkg
  `:/  ||  \;'    Policy:    upgrade
       ||         Repos:
       ||           * https://ncov-ic.github.io/drat
       XX           * https://cloud.r-project.org
       XX           * https://mrc-ide.github.io/didehpc-pkgs
       XX         Packages:
       XX           * context
       OO           * sircovid
       `'           * lubridate
                    * coda
                    * tidyr
                    * viridisLite
                    * orderly
                    * vaultr
                    * readxl
                    * abind
                    * here
                    * mcstate
                    * dust
                    * spimalot
                    * local::Z:/Pablo/spimalot/pkgs/spimalot_0.1.9.tar.gz

 

                                                                                    
! Using bundled GitHub PAT. Please add your own PAT using `gitcreds::gitcreds_set()`.
v Updated metadata database: 4.05 MB in 4 files.                                    

 

i Updating metadata database
v Updating metadata database ... done                                               

 

Error: Cannot install packages:                                                     
* local::Z:/Pablo/spimalot/pkgs/spimalot_0.1.9.tar.gz:
  * Can't install dependency mrc-ide/dust
  * Can't install dependency mrc-ide/mcstate
  * Can't install dependency mrc-ide/sircovid
* mrc-ide/dust: Conflicts with dust
* mrc-ide/sircovid: Conflicts with sircovid
* mrc-ide/mcstate: Conflicts with mcstate
Execution halted
Error in conan::conan_watch(function() client$status_job(dide_id, cluster),  :      
  Installation failed

or, after creation without provisioning:

> obj$install_packages(spimalot_path)
Running installation script on cluster
  ,:\      /:.                                                                      
 //  \_()_/  \\
||   |    |   ||  CONAN THE LIBRARIAN
||   |    |   ||  Library:   Z:\Pablo\ncov-outputs-2\contexts\lib\windows\4.0
||   |____|   ||  Bootstrap: T:\conan\bootstrap\4.0
 \\  / || \  //   Cache:     Z:\Pablo\ncov-outputs-2\contexts\conan\cache/pkg
  `:/  ||  \;'    Policy:    lazy
       ||         Repos:
       ||           * https://cloud.r-project.org
       XX         Packages:
       XX           * Z:/Pablo/spimalot/pkgs/spimalot_0.1.9.tar.gz
       XX
       XX
       OO
       `'

 

Error in get_remote_types(refs) :                                                   
  Can't parse remotes: Z:/Pablo/spimalot/pkgs/spimalot_0.1.9.tar.gz
Calls: conan_install ... is_character -> filter_packages -> <Anonymous> -> get_remote_types
Execution halted
Error in conan::conan_watch(function() client$status_job(dide_id, cluster),  :      
  Installation failed