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Errors in CLSI interpretation #123

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a-cienfuegos opened this issue Oct 3, 2023 · 3 comments
Closed

Errors in CLSI interpretation #123

a-cienfuegos opened this issue Oct 3, 2023 · 3 comments
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bug Something isn't working, labelled wrong or otherwise erroneous

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@a-cienfuegos
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a-cienfuegos commented Oct 3, 2023

There are some errors in the clinical breakpoint CLSI interpretation. Eg. In E. coli MIC=16 is interpreted as S instead I. I checked the dataset and the susceptible breakpoint was set at 16 instead of 8. Can you correct this issue?

@msberends
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Hi, many thanks for bringing this up! We'll look into it. Do you happen to have a screenshot of the CLSI 2023 table where Gram-negatives (or at least, E. coli) is mentioned? And which antibiotic do you mean?

@msberends msberends added the bug Something isn't working, labelled wrong or otherwise erroneous label Oct 4, 2023
@a-cienfuegos
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Hi Dr. Berends, I attached a screenshot of the CLSI 2023 (Table 2A) and the clinical breakpoints table from the AMR package. The antibiotic is ampicillin-sulbactam. Thanks for your help.

CB.pdf

@msberends
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Hi, many thanks for finding this. It appeared to be an error in the WHONET interpretation files that we used. We'll let them know.

Best,
Matthijs

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