installing_phobius_and_signalP.txt

cd /cluster/project/gdc/people/schamath/tools

tar -xvf phobius101_linux.tar.gz

mkdir phobius1.01
mv tmp/tmpCeu5vL/phobius/* ./phobius1.01/
ln -s ./phobius1.01/phobius.pl phobius.pl
rm -r tmp

# usage:
PATH=$PATH:/cluster/project/gdc/people/schamath/tools

phobius.pl



######


tar -xvf signalp-4.1e.Linux.tar.gz

# follwing readme. 
# then:
ln -s ./signalp-4.1/signalp ./signalp

Usage:

PATH=$PATH:/cluster/project/gdc/people/schamath/tools

signalp -h

# exports a gff file:
signalp -f short -t euk -n