Tool | Version | Location |
---|---|---|
java base image | 8 | - |
picard | 2.8.1 | https://github.com/broadinstitute/picard/releases/download/2.8.1/picard.jar |
R | 3.3.3 | r-base for opnejdk:8 |
- CWL specification 1.0
- Use example_inputs.yaml to see the inputs to the cwl
- Example Command using toil:
> toil-cwl-runner picard_hsmetrics_2.8.1.cwl example_inputs.yaml
> usage: picard_hsmetrics_2.8.1.cwl [-h]