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runner.pipeline.json
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runner.pipeline.json
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[
{
"model": "runner.pipeline",
"pk": "6db357d9-bdac-4673-9ab6-758a62c6c34b",
"fields": {
"created_date": "2019-10-08T22:59:41.044Z",
"modified_date": "2019-10-08T22:59:41.044Z",
"name": "Align and Sort",
"github": "https://github.com/mskcc/align_sort_bam",
"version": "0.1.0",
"entrypoint": "align_sort_bam.cwl",
"output_file_group": "a66f03b4-ce43-40d0-9134-d5a3575cabae",
"output_directory": null
}
},
{
"model": "runner.pipeline",
"pk": "be8af61e-46f4-43d4-9838-191b17465bac",
"fields": {
"created_date": "2019-11-19T20:02:32.985Z",
"modified_date": "2019-11-23T11:30:46.376Z",
"name": "access_m1",
"github": "https://github.com/msk-access/fastq_to_bam",
"version": "0.1.1",
"entrypoint": "fastq_to_bam.cwl",
"output_file_group": "d9015037-cd6b-4cb6-87a8-16d355482461",
"output_directory": "/work/pi/beagle/output/access_m1"
}
},
{
"model": "runner.pipeline",
"pk": "cb5d793b-e650-4b7d-bfcd-882858e29cc5",
"fields": {
"created_date": "2019-11-18T17:46:45.118Z",
"modified_date": "2019-12-05T01:12:39.854Z",
"name": "argos",
"github": "https://github.com/mskcc/argos-cwl",
"version": "1.0.0-rc5",
"entrypoint": "workflows/pair-workflow-sv.cwl",
"output_file_group": "a975f490-1b02-4575-abae-a4f8e3667733",
"output_directory": "/juno/work/pi/beagle/output/argos_pair_sv",
"operator": 1
}
},
{
"model": "runner.pipeline",
"pk": "ee5f19d6-f8bf-401f-8cbc-1dd81af10e67",
"fields": {
"created_date": "2019-11-07T21:50:16.747Z",
"modified_date": "2019-12-05T04:34:27.747Z",
"name": "flatbush",
"github": "https://github.com/mskcc-cwl/flatbush",
"version": "master",
"entrypoint": "flatbush.cwl",
"output_file_group": "a66f03b4-ce43-40d0-9134-d5a3575cabae",
"output_directory": "/juno/work/pi/beagle/output/flatbush"
}
},
{
"model": "runner.pipeline",
"pk": "65419097-a2b8-4d57-a8ab-c4c4cddcbea8",
"fields": {
"created_date": "2019-11-18T17:46:45.118Z",
"modified_date": "2019-12-05T01:12:39.854Z",
"name": "copy_outputs",
"github": "https://github.com/mskcc/argos-cwl",
"version": "1.0.0",
"entrypoint": "workflows/copy_outputs.cwl",
"output_file_group": "a975f490-1b02-4575-abae-a4f8e3667733",
"output_directory": "/juno/work/pi/beagle/output/copy_outputs",
"operator": 4
}
}
]